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Umeå University
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Staff photo Ludvig Lizana

Ludvig Lizana

In my research, I want to understand causal relations in gene regulation. To achieve this, I use methods rooted in physics. More information: https://icelab.se/about/team/ludvig-lizana/

Research qualifications: Docent

Contact

E-mail
ludvig.lizana@umu.se
Phone
+46 90 786 77 20

Works at

Affiliation
Associate professor at Department of Physics Role: Assistant head of department
Location
Naturvetarhuset, byggnad G, NA plan 3, IceLab Umeå universitet, 901 87 Umeå
Enhancer-insulator pairing reveals heterogeneous dynamics in long-distance 3D gene regulation
PRX Life, American Physical Society (APS) 2024, Vol. 2, (3)
Hedström, Lucas; Metzler, Ralf; Lizana, Ludvig
The scales, mechanisms, and dynamics of the genome architecture
Science Advances, American Association for the Advancement of Science (AAAS) 2024, Vol. 10, (15)
Lizana, Ludvig; Schwartz, Yuri B.
The scaffolding function of LSD1 controls DNA methylation in mouse ESCs
Nature Communications, Springer Nature 2024, Vol. 15, (1)
Malla, Sandhya; Kumari, Kanchan; García-Prieto, Carlos A.; et al.
Exploring 3D community inconsistency in human chromosome contact networks
Journal of physics. Complexity, Institute of Physics (IOP) 2023, Vol. 4, (3)
Bernenko, Dolores; Lee, Sang Hoon; Lizana, Ludvig
Mapping the semi-nested community structure of 3D chromosome contact networks
PloS Computational Biology, Public Library of Science (PLoS) 2023, Vol. 19, (7)
Bernenko, Dolores; Lee, Sang Hoon; Stenberg, Per; et al.
Modelling chromosome-wide target search
New Journal of Physics, Institute of Physics (IOP) 2023, Vol. 25, (3)
Hedström, Lucas; Lizana, Ludvig
Mapping robust multiscale communities in chromosome contact networks
Scientific Reports, Springer Nature 2023, Vol. 13, (1)
Holmgren, Anton; Bernenko, Dolores; Lizana, Ludvig
Polycomb proteins translate histone methylation to chromatin folding
Journal of Biological Chemistry, Elsevier 2023, Vol. 299, (9)
Lizana, Ludvig; Nahali, Negar; Schwartz, Yuri B.
Forecasting histone methylation by Polycomb complexes with minute-scale precision
Science Advances, American Association for the Advancement of Science (AAAS) 2023, Vol. 9, (51)
Lundkvist, Moa J.; Lizana, Ludvig; Schwartz, Yuri B.
Mapping the semi-nested community structure of 3D chromosome contact networks
Bernenko, Dolores; Lee, Sang Hoon; Stenberg, Per; et al.
Fractal and Knot-Free Chromosomes Facilitate Nucleoplasmic Transport
Physical Review Letters, American Physical Society 2022, Vol. 128, (3)
Kim, Yeonghoon; Lizana, Ludvig; Jeon, Jae-Hyung
Modeling Protein Target Search in Human Chromosomes
Physical Review Research, American Physical Society 2021, Vol. 3, (1)
Nyberg, Markus; Ambjörnsson, Tobias; Stenberg, Per; et al.
First-passage statistics under stochastic resetting in bounded domains
Journal of Physics A: Mathematical and Theoretical, Institute of Physics Publishing (IOPP) 2019, Vol. 52, (22)
Durang, Xavier; Lee, Sungmin; Lizana, Ludvig; et al.
Genomic 3D compartments emerge from unfolding mitotic chromosomes
Chromosoma, Springer 2019, Vol. 128, (1) : 15-20
Kumar, Rajendra; Lizana, Ludvig; Stenberg, Per
Mapping the spectrum of 3D communities in human chromosome conformation capture data
Scientific Reports, Nature Publishing Group 2019, Vol. 9
Lee, Sang Hoon; Kim, Yeonghoon; Lee, Sungmin; et al.
Highly interacting regions of the human genome are enriched with enhancers and bound by DNA repair proteins
Scientific Reports, Nature Publishing Group 2019, Vol. 9
Sobhy, Haitham; Kumar, Rajendra; Lewerentz, Jacob; et al.
Persistence of non-Markovian Gaussian stationary processes in discrete time
Physical review. E, American Physical Society 2018, Vol. 97, (4)
Nyberg, Markus; Lizana, Ludvig
Zero-crossing statistics for non-Markovian time series
Physical review. E, American Physical Society 2018, Vol. 97, (3)
Nyberg, Markus; Lizana, Ludvig; Ambjörnsson, Tobias
Genome contact map explorer: a platform for the comparison, interactive visualization and analysis of genome contact maps
Nucleic Acids Research, Vol. 45, (17)
Kumar, Rajendra; Sobhy, Haitham; Stenberg, Per; et al.
Tracer particles in two-dimensional elastic networks diffuse logarithmically slow
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, Vol. 50, (3)
Lizana, Ludvig; Ambjörnsson, Tobias; Lomholt, Michael A.
Smoluchowski rate for diffusion-controlled reactions of molecules with antenna
Journal of Physics A: Mathematical and Theoretical, Institute of Physics Publishing (IOPP) 2017, Vol. 50, (26)
Vasilyev, Oleg A.; Lizana, Ludvig; Oshanin, Gleb
A simple method to calculate first-passage time densities with arbitrary initial conditions
New Journal of Physics, Institute of Physics Publishing (IOPP) 2016, Vol. 18
Nyberg, Markus; Ambjörnsson, Tobias; Lizana, Ludvig
Many-body effects on tracer particle diffusion with applications for single-protein dynamics on DNA
New Journal of Physics, Vol. 17
Ahlberg, Sebastian; Ambjörnsson, Tobias; Lizana, Ludvig
Non-Markovian effects in the first-passage dynamics of obstructed tracer particle diffusion in one-dimensional systems
Journal of Chemical Physics, American Institute of Physics (AIP) 2014, Vol. 141, (9) : 094902-
Forsling, Robin; Sanders, Lloyd P.; Ambjörnsson, Tobias; et al.
Single-file diffusion with non-thermal initial conditions
Physica A: Statistical Mechanics and its Applications, Elsevier 2014, Vol. 395 : 148-153
Lizana, Ludvig; Lomholt, Michael A.; Ambjörnsson, Tobias
Ageing single file motion
The European Physical Journal Special Topics, Vol. 223, (14) : 3287-3293
Metzler, R.; Sanders, L.; Lomholt, M. A.; et al.
Dynamics of interacting information waves in networks
Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, American Physical Society 2014, Vol. 89, (1) : 012809-
Mirshahvalad, Atieh; Viamontes Esquivel, Alcides; Lizana, Ludvig; et al.
Severe slowing-down and universality of the dynamics in disordered interacting many-body systems: ageing and ultraslow diffusion
New Journal of Physics, Vol. 16 : 113050-
Sanders, Lloyd P.; Lomholt, Michael A.; Lizana, Ludvig; et al.
Exact expressions for the mobility and electrophoretic mobility of a weakly charged sphere in a simple electrolyte
Europhysics letters, Vol. 014, (6) : 68004-
Lizana, Ludvig; Grosberg, Alexander Y.
Microscopic Origin of the Logarithmic Time Evolution of Aging Processes in Complex Systems
Physical Review Letters, American Physical Society 2013, Vol. 110, (20) : 208301-
Lomholt, Michael A.; Lizana, Ludvig; Metzler, Ralf; et al.
Microscopic Origin of the Logarithmic Time Evolution of Aging Processes in Complex Systems
Physical Review Letters, American Physical Society 2013, Vol. 110, (20) : 208301-208306
Lomholt, Michael; Lizana, Ludvig; Metzler, Ralf; et al.
Effects of City-Size Heterogeneity on Epidemic Spreading in a Metapopulation: A Reaction-Diffusion Approach
Journal of statistical physics, New York: Springer 2013, Vol. 151, (1-2) : 367-382
Lund, Halvor; Lizana, Ludvig; Simonsen, Ingve
Quality control system response to stochastic growth of amyloid fibrils
FEBS Letters, Hoboken: John Wiley & Sons 2013, Vol. 587, (9) : 1405-1410
Pigolotti, Simone; Lizana, Ludvig; Otzen, Daniel; et al.
Time walkers and spatial dynamics of aging information
Physical Review Letters, American Physical Society 2010, Vol. 104, (4)
Lizana, Ludvig; Rosvall, Martin; Sneppen, Kim
Identifying stable communities in Hi-C data using a multifractal null model
Hedström, Lucas; Carcedo Martínez, Antón; Lizana, Ludvig
Exploring the benefits of DNA-target search with antenna
Hedström, Lucas; Lizana, Ludvig
Target search on networks-within-networks with applications to protein-DNA interactions
Hedström, Lucas; Yang, Seong-Gyu; Lizana, Ludvig
View publications in DiVA

I teach in these courses:

Modeling the Dynamics of Living Systems syllabus

Modeling and Simulations syllabus

Science Writing: How to Write and Publish Scientific Papers syllabus

The craft of Research: How to Conduct Effective and Meaningful Research (Ph.D. course)