Latest publications

The research performed at Plant Physiology is peer-reviewed and published in international scientific journals. Publications together with Doctoral and Licentiate thesis from the department, that are present in DiVA (Digitala vetenskapliga arkivet) are listed below.

Latest publications

A resource of identified and annotated lincRNAs expressed during somatic embryogenesis development in Norway spruce

Physiologia Plantarum, John Wiley & Sons 2024, Vol. 176, (5)

Canovi, Camilla; Stojkovič, Katja; Ayllón Benítez, Aarón; et al.

A synthetic auxin for cloning mature trees

Nature Biotechnology

Bellini, Catherine

ABI5 binding proteins: key players in coordinating plant growth and development

Trends in Plant Science, Elsevier 2024, Vol. 29, (9) : 1006-1017

Vittozzi, Ylenia; Krüger, Thorben; Majee, Adity; et al.

An improved chromosome-scale genome assembly and population genetics resource for populus tremula

Physiologia Plantarum, John Wiley & Sons 2024, Vol. 176, (5)

Robinson, Kathryn M.; Schiffthaler, Bastian; Liu, Hui; et al.

Antisense transcription from stress-responsive transcription factors fine-tunes the cold response in Arabidopsis

The Plant Cell, Oxford University Press 2024, Vol. 36, (9) : 3467-3482

Meena, Shiv Kumar; Quevedo, Marti; Muniz Nardeli, Sarah; et al.

Biological control of plant parasitic nematodes

Tazueco del Rio, Diego

CDK8 of the mediator kinase module connects leaf development to the establishment of correct stomata patterning by regulating the levels of the transcription factor SPEECHLESS (SPCH)

Plant, Cell and Environment

Hermida-Carrera, Carmen; Vergara, Alexander; Cervela-Cardona, Luis Manuel; et al.

Cell wall integrity modulates HOOKLESS1 and PHYTOCHROME INTERACTING FACTOR4 expression controlling apical hook formation

Plant Physiology, Oxford University Press 2024, Vol. 196, (2) : 1562-1578

Lorrai, Riccardo; Erguvan, Özer; Raggi, Sara; et al.

ChloroSpec: A new in vivo chlorophyll fluorescence spectrometer for simultaneous wavelength- and time-resolved detection

Physiologia Plantarum, John Wiley & Sons 2024, Vol. 176, (2)

Nanda, Sanchali; Shutova, Tatiana; Cainzos, Maximiliano; et al.

Closing Kok’s cycle of nature’s water oxidation catalysis

Nature Communications, Springer Nature 2024, Vol. 15, (1)

Guo, Yu; He, Lanlan; Ding, Yunxuan; et al.

Cryo-electron microscopy reveals hydrogen positions and water networks in photosystem II

Science, American Association for the Advancement of Science (AAAS) 2024, Vol. 384, (6702) : 1349-1355

Hussein, Rana; Graça, André T.; Forsman, Jack; et al.

Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values

Frontiers in Plant Science, Frontiers Media S.A. 2024, Vol. 14

Shi, Tian-Le; Ma, Hai-Yao; Wang, Xinrui; et al.

Editorial: CONSTANS – signal integration and development throughout the plant kingdom

Frontiers in Plant Science, Frontiers Media S.A. 2024, Vol. 15

Nogueira, Fabio T. S.; Goretti, Daniela; Valverde, Federico

Editorial for the special issue ‘Energy conversion reactions in natural and artificial photosynthesis’: a tribute to Ken Sauer

Photosynthesis Research

Yano, Junko; Kern, Jan; Blankenship, Robert E.; et al.

Effect of copper oxide and zinc oxide nanoparticles on photosynthesis and physiology of Raphanus sativus L. under salinity stress

Plant physiology and biochemistry (Paris), Elsevier 2024, Vol. 206

Mahawar, Lovely; Živčák, Marek; Barboricova, Maria; et al.

Effects of colored noise in the dynamic motions and conformational exploration of enzymes

Foundations, MDPI 2024, Vol. 4, (3) : 324-335

Ojeda-May, Pedro; Vergara, Alexander

Effects of small-scale outplanting fertilization on conifer seedling growth and fungal community establishment

Trees, Forests and People, Elsevier 2024, Vol. 16

Schneider, Andreas N.; Castro, David; Holmlund, Mattias; et al.

ER-associated VAP27-1 and VAP27-3 proteins functionally link the lipid-binding ORP2A at the ER-chloroplast contact sites

Nature Communications, Springer Nature 2024, Vol. 15, (1)

Renna, Luciana; Stefano, Giovanni; Puggioni, Maria Paola; et al.

Exploring the world of small proteins in plant biology and bioengineering

Trends in Genetics

Petri, Louise; Van Humbeeck, Anne; Niu, Huanying; et al.

From photosynthesis to industrial applications

Physiologia Plantarum, John Wiley & Sons 2024, Vol. 176, (4)

Funk, Christiane; Schröder, Wolfgang P.

Functional complexity on a cellular scale: why in situ analyses are indispensable for our understanding of lignified tissues

Journal of Agricultural and Food Chemistry, American Chemical Society (ACS) 2024, Vol. 72, (24) : 13552-13560

Blaschek, Leonard; Serk, Henrik; Pesquet, Edouard

Fungal-bacterial combinations in plant health under stress: physiological and biochemical characteristics of the filamentous fungus serendipita indica and the actinobacterium zhihengliuella sp. ISTPL4 under in vitro arsenic stress

Microorganisms, MDPI 2024, Vol. 12, (2)

Sharma, Neha; Koul, Monika; Joshi, Naveen Chandra; et al.

Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting

Plant Biotechnology Journal, John Wiley & Sons 2024, Vol. 22, (5) : 1312-1324

Sandell, Felix L.; Holzweber, Thomas; Street, Nathaniel; et al.

Genomic basis of the distinct biosynthesis of β-glucogallin, a biochemical marker for hydrolyzable tannin production, in three oak species

New Phytologist, John Wiley & Sons 2024, Vol. 242, (6) : 2702-2718

Yang, Qinsong; Li, Jinjin; Wang, Yan; et al.

Glutathione homeostasis: a prerequisite to maintain root system architecture in plants

Journal of Soil Science and Plant Nutrition

Chaudhary, Divya; Agarwal, Himani; Mishra, Arti; et al.

Growth-regulated co-occupancy of Mediator and Lsm3 at intronic ribosomal protein genes

Nucleic Acids Research, Oxford University Press 2024, Vol. 52, (11) : 6220-6233

Abdel-Fattah, Wael R.; Carlsson, Mattias; Hu, Guo-Zhen; et al.

High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar

Plant Physiology, Oxford University Press 2024, Vol. 195, (1) : 652-670

Shi, Tian-Le; Jia, Kai-Hua; Bao, Yu-Tao; et al.

Identifying and validating lincRNAs expressed during terminal leaf development in aspen

Canovi, Camilla; Delhomme, Nicolas; Street, Nathaniel

Indoor contaminants based on fungi

Airborne biocontaminants and their impact on human health, John Wiley & Sons 2024 : 108-122

Chaudhary, Anchal; Bhardwaj, Anamika; Sharma, Nikhil; et al.

Inducible pluripotent suspension cell cultures (iPSCs) to study plant cell differentiation

Xylem: methods and protocols, New York: Humana Press 2024 : 171-200

Ménard, Delphine; Serk, Henrik; Decou, Raphaël; et al.

Integration of mitoflash and time-series transcriptomics facilitates energy dynamics tracking and substrate supply analysis of floral thermogenesis in Lotus

Plant, Cell and Environment

Yu, Miao; Wang, Siqin; Gu, Ge; et al.

Involvement of the tomato BBX16 and BBX17 microProteins in reproductive development

Plant physiology and biochemistry (Paris), Elsevier 2024, Vol. 213

Dusi, Valentina; Pennisi, Federica; Fortini, Daniela; et al.

Methane production from locally available ruminant feedstuffs in Ethiopia: an in vitro study

Animal Feed Science and Technology, Vol. 312

Bekele, Wondimagegne; Huhtanen, Pekka; Zegeye, Abiy; et al.

Microbiological assessment of success and failure in pulp revitalization: a randomized clinical trial using calcium hydroxide and chlorhexidine gluconate in traumatized immature necrotic teeth

Journal of Oral Microbiology, Taylor & Francis Group 2024, Vol. 16, (1)

Wikström, Alina; Romani Vestman, Nelly; Rakhimova, Olena; et al.

Multiple roles of glycerate kinase—from photorespiration to gluconeogenesis, C4 metabolism, and plant immunity

International Journal of Molecular Sciences, MDPI 2024, Vol. 25, (6)

Kleczkowski, Leszek A.; Igamberdiev, Abir U.

New genome insights from chromosome-scale genome assemblies of Norway spruce (Picea abies) and Scots pine (Pinus sylvestris)

Street, Nathaniel; Nystedt, Björn; Delhomme, Nicolas; et al.

Obscurity of chlorophyll tails - Is chlorophyll with farnesyl tail incorporated into PSII complexes?

Physiologia Plantarum, Vol. 176, (4)

Graça, André T.; Lihavainen, Jenna; Hussein, Rana; et al.

Plant uncoupling mitochondrial protein 2 localizes to the Golgi

Plant Physiology, American Society of Plant Biologists 2024, Vol. 194, (2) : 623-628

Fuchs, Philippe; Feixes-Prats, Elisenda; Arruda, Paulo; et al.

Plant-LncPipe: a computational pipeline providing significant improvement in plant lncRNA identification

Horticulture Research, Oxford University Press 2024, Vol. 11, (4)

Tian, Xue-Chan; Chen, Zhao-Yang; Nie, Shuai; et al.

Profiling of 1-aminocyclopropane-1-carboxylic acid and selected phytohormones in Arabidopsis using liquid chromatography-tandem mass spectrometry

Plant Methods, BioMed Central (BMC) 2024, Vol. 20, (1)

Karady, Michal; Hladík, Pavel; Cermanová, Kateřina; et al.

Progress in phylogenetics, multi-omics and flower coloration studies in Rhododendron

Ornamental Plant Research, Maximum Academic Press 2024, Vol. 4

Nie, Shuai; Ma, Hai-Yao; Shi, Tian-Le; et al.

Pseudomonas syringae infectivity correlates to altered transcript and metabolite levels of Arabidopsis mediator mutants

Scientific Reports, Springer Nature 2024, Vol. 14, (1)

Blomberg, Jeanette; Tasselius, Viktor; Vergara, Alexander; et al.

Quantitative proteomics for translational pharmacology and precision medicine: state of the art and future outlook

Drug Metabolism And Disposition, American Society for Pharmacology & Experimental Therapeutics (ASPET) 2024, Vol. 52, (7) : 1208-1216

Prasad, Bhagwat; Al-Majdoub, Zubida M.; Wegler, Christine; et al.

S₁ basic leucine zipper transcription factors shape plant architecture by controlling C/N partitioning to apical and lateral organs

Proceedings of the National Academy of Sciences of the United States of America, Proceedings of the National Academy of Sciences (PNAS) 2024, Vol. 121, (7)

Kreisz, Philipp; Hellens, Alicia M.; Fröschel, Christian; et al.

'Seeing' the electromagnetic spectrum: spotlight on the cryptochrome photocycle

Frontiers in Plant Science, Frontiers Media S.A. 2024, Vol. 15

Aguida, Blanche; Babo, Jonathan; Baouz, Soria; et al.

Segmentation and characterization of macerated fibers and vessels using deep learning

Plant Methods, Springer Nature 2024, Vol. 20, (1)

Qamar, Saqib; Baba, Abu Imran; Verger, Stéphane; et al.

Significance of secondary metabolites elicited by Zhihengliuella sp. ISTPL4 in plant growth promotion under arsenic stress

South African Journal of Botany, Elsevier 2024, Vol. 174 : 383-392

Sharma, Neha; Yadav, Gaurav; koul, Monika; et al.

Synchrotron tomography of magnetoprimed soybean plant root system architecture grown in arsenic-polluted soil

Frontiers in Plant Science, Frontiers Media S.A. 2024, Vol. 15