Latest publications

The research performed at Plant Physiology is peer-reviewed and published in international scientific journals. Publications together with Doctoral and Licentiate thesis from the department, that are present in DiVA (Digitala vetenskapliga arkivet) are listed below.

Latest publications

A synthetic auxin for cloning mature trees

Nature Biotechnology

Bellini, Catherine

ABI5 binding proteins: key players in coordinating plant growth and development

Trends in Plant Science

Vittozzi, Ylenia; Krüger, Thorben; Majee, Adity; et al.

Biological control of plant parasitic nematodes

Tazueco del Rio, Diego

ChloroSpec: A new in vivo chlorophyll fluorescence spectrometer for simultaneous wavelength- and time-resolved detection

Physiologia Plantarum, John Wiley & Sons 2024, Vol. 176, (2)

Nanda, Sanchali; Shutova, Tatiana; Cainzos, Maximiliano; et al.

Cryo-electron microscopy reveals hydrogen positions and water networks in photosystem II

Science, American Association for the Advancement of Science (AAAS) 2024, Vol. 384, (6702) : 1349-1355

Hussein, Rana; Graça, André T.; Forsman, Jack; et al.

Editorial: CONSTANS – signal integration and development throughout the plant kingdom

Frontiers in Plant Science, Frontiers Media S.A. 2024, Vol. 15

Nogueira, Fabio T. S.; Goretti, Daniela; Valverde, Federico

Effect of copper oxide and zinc oxide nanoparticles on photosynthesis and physiology of Raphanus sativus L. under salinity stress

Plant physiology and biochemistry (Paris), Elsevier 2024, Vol. 206

Mahawar, Lovely; Živčák, Marek; Barboricova, Maria; et al.

Effects of colored noise in the dynamic motions and conformational exploration of enzymes

Foundations, MDPI 2024, Vol. 4, (3) : 324-335

Ojeda-May, Pedro; Vergara, Alexander

Effects of small-scale outplanting fertilization on conifer seedling growth and fungal community establishment

Trees, Forests and People, Elsevier 2024, Vol. 16

Schneider, Andreas N.; Castro, David; Holmlund, Mattias; et al.

Functional complexity on a cellular scale: why in situ analyses are indispensable for our understanding of lignified tissues

Journal of Agricultural and Food Chemistry

Blaschek, Leonard; Serk, Henrik; Pesquet, Edouard

Fungal-bacterial combinations in plant health under stress: physiological and biochemical characteristics of the filamentous fungus serendipita indica and the actinobacterium zhihengliuella sp. ISTPL4 under in vitro arsenic stress

Microorganisms, MDPI 2024, Vol. 12, (2)

Sharma, Neha; Koul, Monika; Joshi, Naveen Chandra; et al.

Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting

Plant Biotechnology Journal, John Wiley & Sons 2024, Vol. 22, (5) : 1312-1324

Sandell, Felix L.; Holzweber, Thomas; Street, Nathaniel; et al.

Genomic basis of the distinct biosynthesis of β-glucogallin, a biochemical marker for hydrolyzable tannin production, in three oak species

New Phytologist, John Wiley & Sons 2024, Vol. 242, (6) : 2702-2718

Yang, Qinsong; Li, Jinjin; Wang, Yan; et al.

Growth-regulated co-occupancy of Mediator and Lsm3 at intronic ribosomal protein genes

Nucleic Acids Research, Oxford University Press 2024, Vol. 52, (11) : 6220-6233

Abdel-Fattah, Wael R.; Carlsson, Mattias; Hu, Guo-Zhen; et al.

High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar

Plant Physiology, Oxford University Press 2024, Vol. 195, (1) : 652-670

Shi, Tian-Le; Jia, Kai-Hua; Bao, Yu-Tao; et al.

Inducible pluripotent suspension cell cultures (iPSCs) to study plant cell differentiation

Xylem: methods and protocols, New York: Humana Press 2024 : 171-200

Ménard, Delphine; Serk, Henrik; Decou, Raphaël; et al.

Involvement of the tomato BBX16 and BBX17 microProteins in reproductive development

Plant physiology and biochemistry (Paris), Elsevier 2024, Vol. 213

Dusi, Valentina; Pennisi, Federica; Fortini, Daniela; et al.

Methane production from locally available ruminant feedstuffs in Ethiopia: an in vitro study

Animal Feed Science and Technology, Vol. 312

Bekele, Wondimagegne; Huhtanen, Pekka; Zegeye, Abiy; et al.

Microbiological assessment of success and failure in pulp revitalization: a randomized clinical trial using calcium hydroxide and chlorhexidine gluconate in traumatized immature necrotic teeth

Journal of Oral Microbiology, Taylor & Francis Group 2024, Vol. 16, (1)

Wikström, Alina; Romani Vestman, Nelly; Rakhimova, Olena; et al.

Multiple roles of glycerate kinase—from photorespiration to gluconeogenesis, C4 metabolism, and plant immunity

International Journal of Molecular Sciences, MDPI 2024, Vol. 25, (6)

Kleczkowski, Leszek A.; Igamberdiev, Abir U.

Obscurity of chlorophyll tails - Is chlorophyll with farnesyl tail incorporated into PSII complexes?

Physiologia Plantarum, Vol. 176, (4)

Graça, André T.; Lihavainen, Jenna; Hussein, Rana; et al.

Plant uncoupling mitochondrial protein 2 localizes to the Golgi

Plant Physiology, American Society of Plant Biologists 2024, Vol. 194, (2) : 623-628

Fuchs, Philippe; Feixes-Prats, Elisenda; Arruda, Paulo; et al.

Plant-LncPipe: a computational pipeline providing significant improvement in plant lncRNA identification

Horticulture Research, Vol. 11, (4)

Tian, Xue-Chan; Chen, Zhao-Yang; Nie, Shuai; et al.

Plant-LncPipe: a computational pipeline providing significant improvement in plant lncRNA identification

Horticulture Research, Oxford University Press 2024, Vol. 11, (4)

Tian, Xue-Chan; Chen, Zhao-Yang; Nie, Shuai; et al.

Profiling of 1-aminocyclopropane-1-carboxylic acid and selected phytohormones in Arabidopsis using liquid chromatography-tandem mass spectrometry

Plant Methods, BioMed Central (BMC) 2024, Vol. 20, (1)

Karady, Michal; Hladík, Pavel; Cermanová, Kateřina; et al.

Progress in phylogenetics, multi-omics and flower coloration studies in Rhododendron

Ornamental Plant Research, Maximum Academic Press 2024, Vol. 4

Nie, Shuai; Ma, Hai-Yao; Shi, Tian-Le; et al.

Pseudomonas syringae infectivity correlates to altered transcript and metabolite levels of Arabidopsis mediator mutants

Scientific Reports, Springer Nature 2024, Vol. 14, (1)

Blomberg, Jeanette; Tasselius, Viktor; Vergara, Alexander; et al.

Quantitative proteomics for translational pharmacology and precision medicine: state of the art and future outlook

Drug Metabolism And Disposition, Vol. 52, (7)

Prasad, Bhagwat; Al-Majdoub, Zubida M.; Wegler, Christine; et al.

S₁ basic leucine zipper transcription factors shape plant architecture by controlling C/N partitioning to apical and lateral organs

Proceedings of the National Academy of Sciences of the United States of America, Proceedings of the National Academy of Sciences (PNAS) 2024, Vol. 121, (7)

Kreisz, Philipp; Hellens, Alicia M.; Fröschel, Christian; et al.

'Seeing' the electromagnetic spectrum: spotlight on the cryptochrome photocycle

Frontiers in Plant Science, Frontiers Media S.A. 2024, Vol. 15

Aguida, Blanche; Babo, Jonathan; Baouz, Soria; et al.

The metabolomic profile of microscopic colitis is affected by smoking but not histopathological diagnosis, clinical course, symptoms, or treatment

Metabolites, MDPI 2024, Vol. 14, (6)

Ström, Axel; Stenlund, Hans; Ohlsson, Bodil

The regulatory role of GABA during dark-induced leaf senescence in Arabidopsis thaliana

Gökcebel, Ahmet

The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees

Molecular Plant, Elsevier 2024, Vol. 17, (5) : 725-746

Shi, Tingting; Zhang, Xinxin; Hou, Yukang; et al.

The tiny giant of the sea, Ostreococcus's unique adaptations

Plant physiology and biochemistry (Paris), Elsevier 2024, Vol. 211

Foresi, Noelia; De Marco, María Agustina; Del Castello, Fiorella; et al.

Timing is everything: exploring the role of the circadian clock in plant growth and adaptation

Umeå: Umeå University 2024

Sjölander, Johan

Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

The Plant Journal, John Wiley & Sons 2024, Vol. 117, (3) : 944-955

Estravis Barcala, Maximiliano; van der Valk, Tom; Chen, Zhiqiang; et al.

A phloem-localized Arabidopsis metacaspase (AtMC3) improves drought tolerance

New Phytologist, John Wiley & Sons 2023, Vol. 239 : 1281-1299

Pitsili, Eugenia; Rodriguez-Trevino, Ricardo; Ruiz-Solani, Nerea; et al.

A simple sonication method to isolate the chloroplast lumen in Arabidopsis thaliana

Bio-protocol, Bio-Protocol, LLC 2023, Vol. 13, (15)

Hao, Jingfang; Malnoë, Alizée

Amino acid conjugation of oxIAA is a secondary metabolic regulation involved in auxin homeostasis

New Phytologist, John Wiley & Sons 2023, Vol. 238, (6) : 2264-2270

Brunoni, Federica; Pěnčík, Aleš; Žukauskaitė, Asta; et al.

An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis

New Phytologist, John Wiley & Sons 2023, Vol. 240, (3) : 1082-1096

Norén Lindbäck, Louise; Ji, Yan; Cervela-Cardona, Luis; et al.

An Okinawan-Based Nordic Diet Leads to Profound Effects on Gut Microbiota and Plasma Metabolites Linked to Glucose and Lipid Metabolism

Nutrients, MDPI 2023, Vol. 15, (14)

Manoharan, Lokeshwaran; Roth, Bodil; Bang, Corinna; et al.

Cauliflower mosaic virus protein P6 is a multivalent node for RNA granule proteins and interferes with stress granule responses during plant infection

The Plant Cell, Oxford University Press 2023, Vol. 35, (9) : 3363-3382

Hoffmann, Gesa; López-González, Silvia; Mahboubi, Amir; et al.

Cell wall dynamics: novel tools and research questions

Journal of Experimental Botany, Oxford University Press 2023, Vol. 74, (21) : 6448-6467

Baez, Luis Alonso; Bacete, Laura

Chemical induction of hypocotyl rooting reveals extensive conservation of auxin signalling controlling lateral and adventitious root formation

New Phytologist, New Phytologist Foundation 2023, Vol. 240, (5) : 1883-1899

Zeng, Yinwei; Verstraeten, Inge; Trinh, Hoang Khai; et al.

Chitin degradation by Synechococcus WH7803

Scientific Reports, Springer Nature 2023, Vol. 13, (1)

Capovilla, Giovanna; Castro, Kurt G.; Collani, Silvio; et al.

Chitosan-modified polyethyleneimine nanoparticles for enhancing the carboxylation reaction and plants' CO₂ uptake

ACS Nano, American Chemical Society (ACS) 2023, Vol. 17, (4) : 3430-3441

Routier, Cyril; Vallan, Lorenzo; Daguerre, Yohann; et al.

Chromosome‐scale genome assembly and insights into the metabolome and gene regulation of leaf color transition in an important oak species, Quercus dentata

New Phytologist, John Wiley & Sons 2023, Vol. 238, (5) : 2016-2032

Wang, Wen‐Bo; He, Xiang‐Feng; Yan, Xue‐Mei; et al.

Comparison of plastid proteomes points towards a higher plastidial redox turnover in vascular tissues than in mesophyll cells

Journal of Experimental Botany, Oxford University Press 2023, Vol. 74, (14) : 4110-4124

Boussardon, Clément; Carrie, Chris; Keech, Olivier

Confined-microtubule assembly shapes three-dimensional cell wall structures in xylem vessels

Nature Communications, Springer Nature 2023, Vol. 14, (1)

Sasaki, Takema; Saito, Kei; Inoue, Daisuke; et al.

Cracking the green wall code: insights into cell wall integrity across organisms

Frontiers in Plant Physiology, Frontiers Media S.A. 2023, Vol. 1

Vukašinović, Nemanja; Serif, Manuel; Bacete, Laura

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Latest update: 2020-03-05