Publication list 2016-2018 with involvement of the KBC Infrastructures

Biochemical Imaging Centre Umeå (BICU)

List of publications as co-authors

Kindstedt, E., C. K. Holm, R. Sulniute, I. Martinez-Carrasco, R. Lundmark, and P. Lundberg. 2017. CCL11, a novel mediator of inflammatory bone resorption. Sci Rep 7:5334.

List of publications in Acknowledgements

Brannstrom, K., T. Islam, L. Sandblad, and A. Olofsson. 2017. The role of histidines in amyloid beta fibril assembly. Febs Letters 591:1167-1175.

Bugaytsova, J. A., O. Bjornham, Y. A. Chernov, P. Gideonsson, S. Henriksson, M. Mendez, R. Sjostrom, J. Mahdavi, A. Shevtsova, D. Ilver, K. Moonens, M. P. Quintana-Hayashi, R. Moskalenko, C. Aisenbrey, G. Bylund, A. Schmidt, A. Aberg, K. Brannstrom, V. Koniger, S. Vikstrom, L. Rakhimova, A. Hofer, J. Ogren, H. Liu, M. D. Goldman, J. M. Whitmire, J. Aden, J. Younson, C. G. Kelly, R. H. Gilman, A. Chowdhury, A. K. Mukhopadhyay, G. B. Nair, K. S. Papadakos, B. Martinez-Gonzalez, D. N. Sgouras, L. Engstrand, M. Unemo, D. Danielsson, S. Suerbaum, S. Oscarson, L. A. Morozova-Roche, A. Olofsson, G. Grobner, J. Holgersson, A. Esberg, N. Stromberg, M. Landstrom, A. M. Eldridge, B. A. Chromy, L. M. Hansen, J. V. Solnick, S. K. Linden, R. Haas, A. Dubois, D. S. Merrell, S. Schedin, H. Remaut, A. Arnqvist, D. E. Berg, and T. Boren. 2017. Helicobacter pylori Adapts to Chronic Infection and Gastric Disease via pH-Responsive BabA-Mediated Adherence. Cell Host & Microbe 21:376-389.

Daste, F., A. Walrant, M. R. Holst, J. R. Gadsby, J. Mason, J. E. Lee, D. Brook, M. Mettlen, E. Larsson, S. F. Lee, R. Lundmark, and J. L. Gallop. 2017. Control of actin polymerization via the coincidence of phosphoinositides and high membrane curvature. J Cell Biol 216:3745-3765.

Hoernke, M., J. Mohan, E. Larsson, J. Blomberg, D. Kahra, S. Westenhoff, C. Schwieger, and R. Lundmark. 2017. EHD2 restrains dynamics of caveolae by an ATP-dependent, membrane-bound, open conformation. Proc Natl Acad Sci U S A 114:E4360-E4369.

Holst, M. R., M. Vidal-Quadras, E. Larsson, J. Song, M. Hubert, J. Blomberg, M. Lundborg, M. Landstrom, and R. Lundmark. 2017. Clathrin-Independent Endocytosis Suppresses Cancer Cell Blebbing and Invasion. Cell Rep 20:1893-1905.

Horvath, I., I. A. Iashchishyn, R. A. Moskalenko, C. Wang, S. K. T. S. Warmlander, C. Wallin, A. Graslund, G. G. Kovacs, and L. A. Morozova-Roche. 2018. Co-aggregation of pro-inflammatory S100A9 with alpha-synuclein in Parkinson's disease: ex vivo and in vitro studies. Journal of Neuroinflammation 15.

Iashchishyn, I. A., M. A. Gruden, R. A. Moskalenko, T. V. Davydova, C. Wang, R. D. E. Sewell, and L. A. Morozova-Roche. 2018. Intranasally Administered S100A9 Amyloids Induced Cellular Stress, Amyloid Seeding, and Behavioral Impairment in Aged Mice. Acs Chemical Neuroscience 9:1338-1348.

Iashchishyn, I. A., D. Sulskis, M. N. Ngoc, V. Smirnovas, and L. A. Morozova-Roche. 2017. Finke-Watzky Two-Step Nucleation-Autocatalysis Model of S100A9 Amyloid Formation: Protein Misfolding as "Nucleation" Event. Acs Chemical Neuroscience 8:2152-2158.

Kong, Z., S. Jia, A. L. Chabes, P. Appelblad, R. Lundmark, T. Moritz, and A. Chabes. 2018. Simultaneous determination of ribonucleoside and deoxyribonucleoside triphosphates in biological samples by hydrophilic interaction liquid chromatography coupled with tandem mass spectrometry. Nucleic Acids Res 46:e66.

Majda, M., P. Grones, I. M. Sintorn, T. Vain, P. Milani, P. Krupinski, B. Zagorska-Marek, C. Viotti, H. Jonsson, E. J. Mellerowicz, O. Hamant, and S. Robert. 2017. Mechanochemical Polarization of Contiguous Cell Walls Shapes Plant Pavement Cells. Dev Cell 43:290-304 e294.

Melo, A. A., B. G. Hegde, C. Shah, E. Larsson, J. M. Isas, S. Kunz, R. Lundmark, R. Langen, and O. Daumke. 2017. Structural insights into the activation mechanism of dynamin-like EHD ATPases. Proc Natl Acad Sci U S A 114:5629-5634.

Nygard Skalman, L., M. R. Holst, E. Larsson, and R. Lundmark. 2018. Plasma membrane damage caused by listeriolysin O is not repaired through endocytosis of the membrane pore. Biol Open 7.

Storm, R. J., B. D. Persson, L. N. Skalman, L. Frangsmyr, M. Lindstrom, G. Rankin, R. Lundmark, F. P. Domellof, and N. Arnberg. 2017. Human Adenovirus Type 37 Uses alphaVbeta1 and alpha3beta1 Integrins for Infection of Human Corneal Cells. J Virol 91.

Vdovikova, S., M. Luhr, P. Szalai, L. Nygard Skalman, M. K. Francis, R. Lundmark, N. Engedal, J. Johansson, and S. N. Wai. 2017. A Novel Role of Listeria monocytogenes Membrane Vesicles in Inhibition of Autophagy and Cell Death. Front Cell Infect Microbiol 7:154.

Vidal-Quadras, M., M. R. Holst, M. K. Francis, E. Larsson, M. Hachimi, W. L. Yau, J. Peranen, F. Martin-Belmonte, and R. Lundmark. 2017. Endocytic turnover of Rab8 controls cell polarization. J Cell Sci 130:1147-1157.

Vonderstein, K., E. Nilsson, P. Hubel, L. Nygard Skalman, A. Upadhyay, J. Pasto, A. Pichlmair, R. Lundmark, and A. K. Overby. 2018. Viperin Targets Flavivirus Virulence by Inducing Assembly of Noninfectious Capsid Particles. J Virol 92.

Umeå Core facility for Electron Microscopy (UCEM)

Addario, B., L. Sandblad, K. Persson, and L. Backman. 2016. Characterisation of Schizosaccharomyces pombe alpha-actinin. PeerJ 4:e1858.

Annamalai, A., R. Sandstrom, E. Gracia-Espino, N. Boulanger, J. F. Boily, I. Muhlbacher, A. Shchukarev, and T. Wagberg. 2018. Influence of Sb5+ as a Double Donor on Hematite (Fe3+) Photoanodes for Surface-Enhanced Photoelectrochemical Water Oxidation. Acs Applied Materials & Interfaces 10:16467-16473.

Backman, L. 2018. Alpha-actinin of the chlorarchiniophyte Bigelowiella natans. PeerJ 6:e4288.

Blomquist, N., T. Wells, B. Andres, J. Backstrom, S. Forsberg, and H. Olin. 2017. Metal-free supercapacitor with aqueous electrolyte and low-cost carbon materials. Scientific Reports 7.

Bra Nnstro, M. K., A. L. Gharibyan, T. Islam, I. Iakovleva, L. Nilsson, C. C. Lee, L. Sandblad, A. Pamren, and A. Olofsson. 2018. Scanning electron microscopy as a tool for evaluating morphology of amyloid structures formed on surface plasmon resonance chips. Data Brief 19:1166-1170.

Brannstrom, K., T. Islam, A. L. Gharibyan, I. Iakovleva, L. Nilsson, C. C. Lee, L. Sandblad, A. Pamren, and A. Olofsson. 2018. The Properties of Amyloid-beta Fibrils Are Determined by their Path of Formation. J Mol Biol 430:1940-1949.

Brannstrom, K., T. Islam, L. Sandblad, and A. Olofsson. 2017. The role of histidines in amyloid beta fibril assembly. Febs Letters 591:1167-1175.

Chen, G. Q., G. C. Wu, B. Alriksson, W. Wang, F. F. Hong, and L. J. Jonsson. 2017a. Bioconversion of Waste Fiber Sludge to Bacterial Nanocellulose and Use for Reinforcement of CTMP Paper Sheets. Polymers 9.

Chen, J., W. Zhang, P. Kelk, L. J. Backman, and P. Danielson. 2017b. Substance P and patterned silk biomaterial stimulate periodontal ligament stem cells to form corneal stroma in a bioengineered three-dimensional model. Stem Cell Res Ther 8:260.

Chrobok, D., S. R. Law, B. Brouwer, P. Linden, A. Ziolkowska, D. Liebsch, R. Narsai, B. Szal, T. Moritz, N. Rouhier, J. Whelan, P. Gardestrom, and O. Keech. 2016. Dissecting the Metabolic Role of Mitochondria during Developmental Leaf Senescence. Plant Physiol 172:2132-2153.

Dongre, M., B. Singh, K. M. Aung, P. Larsson, R. Miftakhova, K. Persson, F. Askarian, M. Johannessen, J. von Hofsten, J. L. Persson, M. Erhardt, S. Tuck, B. E. Uhlin, and S. N. Wai. 2018. Flagella-mediated secretion of a novel Vibrio cholerae cytotoxin affecting both vertebrate and invertebrate hosts. Commun Biol 1:59.

Dubreuil, C., X. Jin, J. D. Barajas-Lopez, T. C. Hewitt, S. K. Tanz, T. Dobrenel, W. P. Schroder, J. Hanson, E. Pesquet, A. Gronlund, I. Small, and A. Stranda. 2018. Establishment of Photosynthesis through Chloroplast Development Is Controlled by Two Distinct Regulatory Phases. Plant Physiology 176:1199-1214.

Eivazihollagh, A., J. Backstrom, C. Dahlstrom, F. Carlsson, I. Ibrahem, B. Lindman, H. Edlund, and M. Norgren. 2017. One-pot synthesis of cellulose-templated copper nanoparticles with antibacterial properties. Materials Letters 187:170-172.

Ekspong, J., R. Sandstrom, L. P. Rajukumar, M. Terrones, T. Wagberg, and E. Gracia-Espino. 2018. Stable Sulfur-Intercalated 1T ' MoS2 on Graphitic Nanoribbons as Hydrogen Evolution Electrocatalyst. Advanced Functional Materials 28.

Ekspong, J., T. Sharifi, A. Shchukarev, A. Klechikov, T. Wagberg, and E. Gracia-Espino. 2016. Stabilizing Active Edge Sites in Semicrystalline Molybdenum Sulfide by Anchorage on Nitrogen-Doped Carbon Nanotubes for Hydrogen Evolution Reaction. Advanced Functional Materials 26:6766-6776.

Enevold, J., C. Larsen, J. Zakrisson, M. Andersson, and L. Edman. 2018. Realizing Large-Area Arrays of Semiconducting Fullerene Nanostructures with Direct Laser Interference Patterning. Nano Letters 18:540-545.

Felten, J., J. Vahala, J. Love, A. Gorzsas, M. Ruggeberg, N. Delhomme, J. Lesniewska, J. Kangasjarvi, T. R. Hvidsten, E. J. Mellerowicz, and B. Sundberg. 2018. Ethylene signaling induces gelatinous layers with typical features of tension wood in hybrid aspen. New Phytologist 218:999-1014.

Hagman, H., M. Lundberg, and D. Bostrom. 2017. Alloy Selection for a Cofired Circulating Fluidized Bed Boiler Vortex Finder Application at 880 degrees C in a Complex Mixed Mode Corrosion Environment. Energy & Fuels 31:12857-12866.

Holmgren, K. H., T. Gustafsson, and A. Ostin. 2016. Screening of nerve agent markers with hollow fiber-chemosorption of phosphonic acids. J Chromatogr B Analyt Technol Biomed Life Sci 1033-1034:97-105.

Jahns, A. C., H. Eilers, and O. A. Alexeyev. 2016. Transcriptomic analysis of Propionibacterium acnes biofilms in vitro. Anaerobe 42:111-118.

Klechikov, A., J. H. Sun, G. Z. Hu, M. B. Zheng, T. Wagberg, and A. V. Talyzin. 2017. Graphene decorated with metal nanoparticles: Hydrogen sorption and related artefacts. Microporous and Mesoporous Materials 250:27-34.

Konwar, L. J., A. Samikannu, P. Maki-Arvela, and J. P. Mikkola. 2018. Efficient C-C coupling of bio-based furanics and carbonyl compounds to liquid hydrocarbon precursors over lignosulfonate derived acidic carbocatalysts. Catalysis Science & Technology 8:2449-2459.

Kwong, W. L., E. Gracia-Espino, C. C. Lee, R. Sandstrom, T. Wagberg, and J. Messinger. 2017a. Cationic Vacancy Defects in Iron Phosphide: A Promising Route toward Efficient and Stable Hydrogen Evolution by Electrochemical Water Splitting. ChemSusChem 10:4544-4551.

Kwong, W. L., C. C. Lee, and J. Messinger. 2016. Transparent Nanoparticulate FeOOH Improves the Performance of a WO3 Photoanode in a Tandem Water-Splitting Device. Journal of Physical Chemistry C 120:10941-10950.

Kwong, W. L., C. C. Lee, and J. Messinger. 2017b. Scalable Two-Step Synthesis of Nickel Iron Phosphide Electrodes for Stable and Efficient Electrocatalytic Hydrogen Evolution. Journal of Physical Chemistry C 121:284-292.

Kwong, W. L., C. C. Lee, A. Shchukarev, E. Bjorn, and J. Messinger. 2018. High-performance iron (III) oxide electrocatalyst for water oxidation in strongly acidic media. Journal of Catalysis 365:29-35.

Lindholm, M., K. Min Aung, S. Nyunt Wai, and J. Oscarsson. 2019. Role of OmpA1 and OmpA2 in Aggregatibacter actinomycetemcomitans and Aggregatibacter aphrophilus serum resistance. J Oral Microbiol 11:1536192.

Liu, M. Q., T. M. Tran, A. A. A. Elhaj, S. B. Torsetnes, O. N. Jensen, B. Sellergren, and K. Irgum. 2017. Molecularly Imprinted Porous Monolithic Materials from Melamine-Formaldehyde for Selective Trapping of Phosphopeptides. Analytical Chemistry 89:9491-9501.

McLoon, L. K., A. Vicente, K. R. Fitzpatrick, M. Lindstrom, and F. P. Domellof. 2018. Composition, Architecture, and Functional Implications of the Connective Tissue Network of the Extraocular Muscles. Investigative Ophthalmology & Visual Science 59:322-329.

Addario, B., L. Sandblad, K. Persson, and L. Backman. 2016. Characterisation of Schizosaccharomyces pombe alpha-actinin. PeerJ 4:e1858.

Backman, L. 2018. Alpha-actinin of the chlorarchiniophyte Bigelowiella natans. PeerJ 6:e4288.

Blomquist, N., T. Wells, B. Andres, J. Backstrom, S. Forsberg, and H. Olin. 2017. Metal-free supercapacitor with aqueous electrolyte and low-cost carbon materials. Scientific Reports 7.

Brannstrom, K., T. Islam, L. Sandblad, and A. Olofsson. 2017. The role of histidines in amyloid beta fibril assembly. Febs Letters 591:1167-1175.

Jahns, A. C., H. Eilers, and O. A. Alexeyev. 2016. Transcriptomic analysis of Propionibacterium acnes biofilms in vitro. Anaerobe 42:111-118.

Nilsson, L., A. Pamren, T. Islam, K. Brannstrom, S. A. Golchin, N. Pettersson, I. Iakovleva, L. Sandblad, A. L. Gharibyan, and A. Olofsson. 2018. Transthyretin Interferes with Abeta Amyloid Formation by Redirecting Oligomeric Nuclei into Non-Amyloid Aggregates. J Mol Biol 430:2722-2733.

Norlin, S., V. Parekh, and H. Edlund. 2018. The ATPase activity of Asna1/TRC40 is required for pancreatic progenitor cell survival. Development 145.

Paulsson, M., K. F. Che, J. Ahl, J. Tham, L. Sandblad, M. E. Smith, I. Qvarfordt, Y. C. Su, A. Linden, and K. Riesbeck. 2018. Bacterial Outer Membrane Vesicles Induce Vitronectin Release Into the Bronchoalveolar Space Conferring Protection From Complement-Mediated Killing. Front Microbiol 9:1559.

Pham, T. N., T. Sharifi, R. Sandstrom, W. Siljebo, A. Shchukarev, K. Kordas, T. Wagberg, and J. P. Mikkola. 2017. Robust hierarchical 3D carbon foam electrode for efficient water electrolysis. Scientific Reports 7.

Rajan, A., B. D. Persson, L. Frangsmyr, A. Olofsson, L. Sandblad, J. Heino, Y. Takada, A. P. Mould, L. M. Schnapp, J. Gall, and N. Arnberg. 2018. Enteric Species F Human Adenoviruses use Laminin-Binding Integrins as Co-Receptors for Infection of Ht-29 Cells. Sci Rep 8:10019.

Rende, U., W. Wang, M. L. Gandla, L. J. Jonsson, and T. Niittyla. 2017. Cytosolic invertase contributes to the supply of substrate for cellulose biosynthesis in developing wood. New Phytol 214:796-807.

Sandstrom, R., E. Gracia-Espino, G. Z. Hu, A. Shchukarev, J. Y. Ma, and T. Wagberg. 2018. Yttria stabilized and surface activated platinum (PtxYOy) nanoparticles through rapid microwave assisted synthesis for oxygen reduction reaction. Nano Energy 46:141-149.

Soderholm, N., A. Javadi, I. S. Flores, K. Flardh, and L. Sandblad. 2018. Affinity to cellulose is a shared property among coiled-coil domains of intermediate filaments and prokaryotic intermediate filament-like proteins. Sci Rep 8:16524.

Strandberg, A., M. Thyrel, N. Skoglund, T. A. Lestander, M. Brostrom, and R. Backman. 2018. Biomass pellet combustion: Cavities and ash formation characterized by synchrotron X-ray micro-tomography. Fuel Processing Technology 176:211-220.

Sun, J., A. Klechikov, C. Moise, M. Prodana, M. Enachescu, and A. V. Talyzin. 2018. A Molecular Pillar Approach To Grow Vertical Covalent Organic Framework Nanosheets on Graphene: Hybrid Materials for Energy Storage. Angew Chem Int Ed Engl 57:1034-1038.

Sun, J. H., F. Morales-Lara, A. Klechikov, A. V. Talyzin, I. A. Baburin, G. Seifert, F. Cardano, M. Baldrighi, M. Frasconi, and S. Giordani. 2017. Porous graphite oxide pillared with tetrapod-shaped molecules. Carbon 120:145-156.

Talyzin, A. V., G. Mercier, A. Klechikov, M. Hedenstrom, D. Johnels, D. Wei, D. Cotton, A. Opitz, and E. Moons. 2017. Brodie vs Hummers graphite oxides for preparation of multi-layered materials. Carbon 115:430-440.

Tollefsen, E., G. Stockmann, A. Skelton, C. M. Morth, C. Dupraz, and E. Sturkell. 2018. Chemical controls on ikaite formation. Mineralogical Magazine 82:1119-1129.

Trager, A., A. Carlmark, and L. Wagberg. 2018. Interpenetrated Networks of Nanocellulose and Polyacrylamide with Excellent Mechanical and Absorptive Properties. Macromolecular Materials and Engineering 303.

Vdovikova, S., M. Luhr, P. Szalai, L. N. Skalman, M. K. Francis, R. Lundmark, N. Engedal, J. Johansson, and S. N. Wai. 2017. A Novel Role of Listeria monocytogenes Membrane Vesicles in Inhibition of Autophagy and Cell Death. Frontiers in Cellular and Infection Microbiology 7.

Wierzbicka, C., M. Q. Liu, D. Bauer, K. Irgum, and B. Sellergren. 2017. Cationic pTyr/pSer imprinted polymers based on a bis-imidazolium host monomer: phosphopeptide recognition in aqueous buffers demonstrated by mu-liquid chromatography and monolithic columns. Journal of Materials Chemistry B 5:953-960.

Yesilbas, M., and J. F. Boily. 2016a. Particle Size Controls on Water Adsorption and Condensation Regimes at Mineral Surfaces. Sci Rep 6:32136.

Yesilbas, M., and J. F. Boily. 2016b. Thin Ice Films at Mineral Surfaces. Journal of Physical Chemistry Letters 7:2849-2855.

Yesilbas, M., C. C. Lee, and J. F. Boily. 2018. Ice and Cryosalt Formation in Saline Microporous Clay Gels. Acs Earth and Space Chemistry 2:314-319.

Zakrisson, J., B. Singh, P. Svenmarker, K. Wiklund, H. Zhang, S. Hakobyan, M. Ramstedt, and M. Andersson. 2016. Detecting Bacterial Surface Organelles on Single Cells Using Optical Tweezers. Langmuir 32:4521-4529.

Zhang, W., K. Blum, M. Gros, L. Ahrens, H. Jernstedt, K. Wiberg, P. L. Andersson, B. Bjorlenius, and G. Renman. 2018. Removal of micropollutants and nutrients in household wastewater using organic and inorganic sorbents. Desalination and Water Treatment 120:88-108.

Zhang, W., J. Chen, L. J. Backman, A. D. Malm, and P. Danielson. 2017. Surface Topography and Mechanical Strain Promote Keratocyte Phenotype and Extracellular Matrix Formation in a Biomimetic 3D Corneal Model. Adv Healthc Mater 6.

Swedish Metabolomics Centre (SMC)

Collaborative-service

Karimpour, M., I. Surowiec, J. Wu, S. Gouveia-Figueira, R. Pinto, J. Trygg, A. M. Zivkovic, and M. L. Nording. 2016. Postprandial metabolomics: A pilot mass spectrometry and NMR study of the human plasma metabolome in response to a challenge meal. Anal Chim Acta 908:121-131.

Missailidis, C., J. Hallqvist, A. R. Qureshi, P. Barany, O. Heimburger, B. Lindholm, P. Stenvinkel, and P. Bergman. 2016. Serum Trimethylamine-N-Oxide Is Strongly Related to Renal Function and Predicts Outcome in Chronic Kidney Disease. PLoS One 11:e0141738.

Obudulu, O., J. Bygdell, B. Sundberg, T. Moritz, T. R. Hvidsten, J. Trygg, and G. Wingsle. 2016. Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development. BMC Genomics 17:119.

Teixeira, P. F., B. Kmiec, R. M. Branca, M. W. Murcha, A. Byzia, A. Ivanova, J. Whelan, M. Drag, J. Lehtio, and E. Glaser. 2017. A multi-step peptidolytic cascade for amino acid recovery in chloroplasts. Nat Chem Biol 13:15-17.

Service

Adolfsson, L., H. Nziengui, I. N. Abreu, J. Simura, A. Beebo, A. Herdean, J. Aboalizadeh, J. Siroka, T. Moritz, O. Novak, K. Ljung, B. Schoefs, and C. Spetea. 2017. Enhanced Secondary- and Hormone Metabolism in Leaves of Arbuscular Mycorrhizal Medicago truncatula. Plant Physiology 175:392-411.

Alhouayek, M., L. Rankin, S. Gouveia-Figueira, and C. J. Fowler. 2018. Interferon gamma treatment increases endocannabinoid and related N-acylethanolamine levels in T84 human colon carcinoma cells. Br J Pharmacol.

Bai, B., O. Novak, K. Ljung, J. Hanson, and L. Bentsink. 2018. Combined transcriptome and translatome analyses reveal a role for tryptophan-dependent auxin biosynthesis in the control of DOG1-dependent seed dormancy. New Phytol 217:1077-1085.

Bengtsson, A. A., J. Trygg, D. M. Wuttge, G. Sturfelt, E. Theander, M. Donten, T. Moritz, C. J. Sennbro, F. Torell, C. Lood, I. Surowiec, S. Rannar, and T. Lundstedt. 2016. Metabolic Profiling of Systemic Lupus Erythematosus and Comparison with Primary Sjogren's Syndrome and Systemic Sclerosis. PLoS One 11.

Bergenholm, D., M. Gossing, Y. J. Wei, V. Siewers, and J. Nielsen. 2018. Modulation of saturation and chain length of fatty acids in Saccharomyces cerevisiae for production of cocoa butter-like lipids. Biotechnology and Bioengineering 115:932-942.

Bergstrom, S. H., S. H. Rudolfsson, and A. Bergh. 2016. Rat Prostate Tumor Cells Progress in the Bone Microenvironment to a Highly Aggressive Phenotype. Neoplasia 18:152-161.

Carlsson, J., H. Svennerstam, T. Moritz, U. Egertsdotter, and U. Ganeteg. 2017. Nitrogen uptake and assimilation in proliferating embryogenic cultures of Norway spruce-Investigating the specific role of glutamine. PLoS One 12.

Cedernaes, J., M. Schonke, J. O. Westholm, J. Mi, A. Chibalin, S. Voisin, M. Osler, H. Vogel, K. Hornaeus, S. L. Dickson, S. B. Lind, J. Bergquist, H. B. Schioth, J. R. Zierath, and C. Benedict. 2018. Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans. Science Advances 4.

Claeson, A. S., S. Gouveia-Figueira, J. Haggstrom, C. J. Fowler, and M. L. Nording. 2017. Levels of oxylipins, endocannabinoids and related lipids in plasma before and after low-level exposure to acrolein in healthy individuals and individuals with chemical intolerance. Prostaglandins Leukot Essent Fatty Acids 121:60-67.

Czaban, W., S. Jamtgard, T. Nasholm, J. Rasmussen, M. Nicolaisen, and I. S. Fomsgaard. 2016. Direct acquisition of organic N by white clover even in the presence of inorganic N. Plant and Soil 407:91-107.

Decker, V. H., F. Bandau, M. J. Gundale, C. T. Cole, and B. R. Albrectsen. 2017. Aspen phenylpropanoid genes' expression levels correlate with genets' tannin richness and vary both in responses to soil nitrogen and associations with phenolic profiles. Tree Physiology 37:270-279.

Dobrenel, T., C. Caldana, J. Hanson, C. Robaglia, M. Vincentz, B. Veit, and C. Meyer. 2016a. TOR Signaling and Nutrient Sensing. Annual Review of Plant Biology, Vol 68 67:261-285.

Dobrenel, T., E. Mancera-Martinez, C. Forzani, M. Azzopardi, M. Davanture, M. Moreau, M. Schepetilnikov, J. Chicher, O. Langella, M. Zivy, C. Robaglia, L. A. Ryabova, J. Hanson, and C. Meyer. 2016b. The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front Plant Sci 7:1611.

Dobrowolska, I., E. Businge, I. N. Abreu, T. Moritz, and U. Egertsdotter. 2017. Metabolome and transcriptome profiling reveal new insights into somatic embryo germination in Norway spruce (Picea abies). Tree Physiology 37:1752-1766.

Dubreuil, C., X. Jin, J. D. Barajas-Lopez, T. C. Hewitt, S. K. Tanz, T. Dobrenel, W. P. Schroder, J. Hanson, E. Pesquet, A. Gronlund, I. Small, and A. Strand. 2018. Establishment of Photosynthesis through Chloroplast Development Is Controlled by Two Distinct Regulatory Phases. Plant Physiol 176:1199-1214.

Edlund, E., O. Novak, M. Karady, K. Ljung, and S. Jansson. 2017. Contrasting patterns of cytokinins between years in senescing aspen leaves. Plant Cell and Environment 40:622-634.

Falkevall, A., A. Mehlem, I. Palombo, B. Heller Sahlgren, L. Ebarasi, L. He, A. J. Ytterberg, H. Olauson, J. Axelsson, B. Sundelin, J. Patrakka, P. Scotney, A. Nash, and U. Eriksson. 2017. Reducing VEGF-B Signaling Ameliorates Renal Lipotoxicity and Protects against Diabetic Kidney Disease. Cell Metab 25:713-726.

Figueira, J., S. Gouveia-Figueira, C. Ohman, P. L. Holgerson, M. L. Nording, and A. Ohman. 2017. Metabolite quantification by NMR and LC-MS/MS reveals differences between unstimulated, stimulated, and pure parotid saliva. Journal of Pharmaceutical and Biomedical Analysis 140:295-300.

Gabrielsson, L., S. Gouveia-Figueira, J. Haggstrom, M. Alhouayek, and C. J. Fowler. 2017. The anti-inflammatory compound palmitoylethanolamide inhibits prostaglandin and hydroxyeicosatetraenoic acid production by a macrophage cell line. Pharmacol Res Perspect 5:e00300.

Ge, Y., F. Yan, M. Zourelidou, M. Wang, K. Ljung, A. Fastner, U. Z. Hammes, M. Di Donato, M. Geisler, C. Schwechheimer, and Y. Tao. 2017. SHADE AVOIDANCE 4 Is Required for Proper Auxin Distribution in the Hypocotyl. Plant Physiol 173:788-800.

Goncalves, S., M. Kahlert, S. F. P. Almeida, and E. Figueira. 2018. Assessing Cu impacts on freshwater diatoms: biochemical and metabolomic responses of Tabellaria flocculosa (Roth) Kutzing. Science of the Total Environment 625:1234-1246.

Jamtgard, S., N. Robinson, T. Moritz, M. L. Colgrave, and S. Schmidt. 2018. Optimising methods for the recovery and quantification of di- and tripeptides in soil. Soil Research 56:404-412.

Jia, M., T. Andreassen, L. Jensen, T. F. Bathen, I. Sinha, H. Gao, C. Zhao, L. A. Haldosen, Y. Cao, L. Girnita, S. A. Moestue, and K. Dahlman-Wright. 2016. Estrogen Receptor alpha Promotes Breast Cancer by Reprogramming Choline Metabolism. Cancer Res 76:5634-5646.

Karlsborn, T., A. K. M. F. Mahmud, H. Tukenmez, and A. S. Bystrom. 2016. Loss of ncm(5) and mcm(5) wobble uridine side chains results in an altered metabolic profile. Metabolomics 12.

Karlsson, J., S. Gouveia-Figueira, M. Alhouayek, and C. J. Fowler. 2017. Effects of tumour necrosis factor alpha upon the metabolism of the endocannabinoid anandamide in prostate cancer cells. PLoS One 12.

Kauppi, A. M., A. Edin, I. Ziegler, P. Molling, A. Sjostedt, A. Gylfe, K. Stralin, and A. Johansson. 2016. Metabolites in Blood for Prediction of Bacteremic Sepsis in the Emergency Room. PLoS One 11.

Kmiec, B., R. M. M. Branca, M. W. Murcha, J. Lehtio, E. Glaser, and P. F. Teixeira. 2018. A Common Peptidolytic Mechanism for Targeting Peptide Degradation in Mitochondria and Chloroplasts. Mol Plant 11:342-345.

Kong, Z. Q., S. D. Jia, A. L. Chabes, P. Appelblad, R. Lundmark, T. Moritz, and A. Chabes. 2018. Simultaneous determination of ribonucleoside and deoxyribonucleoside triphosphates in biological samples by hydrophilic interaction liquid chromatography coupled with tandem mass spectrometry. Nucleic Acids Research 46.

Lesniewska, J., D. Ohman, M. Krzeslowska, S. Kushwah, M. Barciszewska-Pacak, L. A. Kleczkowski, B. Sundberg, T. Moritz, and E. J. Mellerowicz. 2017. Defense Responses in Aspen with Altered Pectin Methylesterase Activity Reveal the Hormonal Inducers of Tyloses. Plant Physiol 173:1409-1419.

Lindahl, A., J. Forshed, and A. Nordstrom. 2016. Overlap in serum metabolic profiles between non-related diseases: Implications for LC-MS metabolomics biomarker discovery. Biochemical and Biophysical Research Communications 478:1472-1477.

Lindahl, A., R. Heuchel, J. Forshed, J. Lehtio, M. Lohr, and A. Nordstrom. 2017a. Discrimination of pancreatic cancer and pancreatitis by LC-MS metabolomics. Metabolomics 13.

Lindahl, A., S. Saaf, J. Lehtio, and A. Nordstrom. 2017b. Tuning Metabolome Coverage in Reversed Phase LC-MS Metabolomics of MeOH Extracted Samples Using the Reconstitution Solvent Composition. Analytical Chemistry 89:7356-7364.

Linden, P., O. Keech, H. Stenlund, P. Gardestrom, and T. Moritz. 2016. Reduced mitochondrial malate dehydrogenase activity has a strong effect on photorespiratory metabolism as revealed by 13C labelling. Journal of Experimental Botany 67:3123-3135.

Mafra, D., N. A. Borges, L. Cardozo, J. S. Anjos, A. P. Black, C. Moraes, P. Bergman, B. Lindholm, and P. Stenvinkel. 2018. Red meat intake in chronic kidney disease patients: Two sides of the coin. Nutrition 46:26-32.

Malm, L., G. Tybring, T. Moritz, B. Landin, and J. Galli. 2016. Metabolomic Quality Assessment of EDTA Plasma and Serum Samples. Biopreserv Biobank 14:416-423.

Martens, D. S., S. Gouveia, N. Madhloum, B. G. Janssen, M. Plusquin, C. Vanpoucke, W. Lefebvre, B. Forsberg, M. Nording, and T. S. Nawrot. 2017. Neonatal Cord Blood Oxylipins and Exposure to Particulate Matter in the Early-Life Environment: An ENVIRONAGE Birth Cohort Study. Environ Health Perspect 125:691-698.

Martins, S., A. Montiel-Jorda, A. Cayrel, S. Huguet, C. Paysant-Le Roux, K. Ljung, and G. Vert. 2017. Brassinosteroid signaling-dependent root responses to prolonged elevated ambient temperature. Nature Communications 8.

Mehlem, A., I. Palombo, X. Wang, C. E. Hagberg, U. Eriksson, and A. Falkevall. 2016. PGC-1 alpha Coordinates Mitochondrial Respiratory Capacity and Muscular Fatty Acid Uptake via Regulation of VEGF-B. Diabetes 65:861-873.

Nasstrom, E., C. M. Parry, N. T. Vu Thieu, R. R. Maude, H. K. de Jong, M. Fukushima, O. Rzhepishevska, F. Marks, U. Panzner, J. Im, H. Jeon, S. Park, Z. Chaudhury, A. Ghose, R. Samad, T. T. Van, A. Johansson, A. M. Dondorp, G. E. Thwaites, A. Faiz, H. Antti, and S. Baker. 2017. Reproducible diagnostic metabolites in plasma from typhoid fever patients in Asia and Africa. Elife 6.

Novak, O., A. Pencik, O. Blahousek, and K. Ljung. 2016. Quantitative Auxin Metabolite Profiling Using Stable Isotope Dilution UHPLC-MS/MS. Curr Protoc Plant Biol 1:419-430.

Orikiiriza, J., I. Surowiec, E. Lindquist, M. Bonde, J. Magambo, C. Muhinda, S. Bergstrom, J. Trygg, and J. Normark. 2017. Lipid response patterns in acute phase paediatric Plasmodium falciparum malaria. Metabolomics 13:41.

Otten, J., A. Stomby, M. Waling, A. Isaksson, I. Soderstrom, M. Ryberg, M. Svensson, J. Hauksson, and T. Olsson. 2018. A heterogeneous response of liver and skeletal muscle fat to the combination of a Paleolithic diet and exercise in obese individuals with type 2 diabetes: a randomised controlled trial. Diabetologia 61:1548-1559.

Pacheco-Villalobos, D., S. M. Diaz-Moreno, A. van der Schuren, T. Tamaki, Y. H. Kang, B. Gujas, O. Novak, N. Jaspert, Z. Li, S. Wolf, C. Oecking, K. Ljung, V. Bulone, and C. S. Hardtke. 2016. The Effects of High Steady State Auxin Levels on Root Cell Elongation in Brachypodium. Plant Cell 28:1009-1024.

Papazian, S., E. Khaling, C. Bonnet, S. Lassueur, P. Reymond, T. Moritz, J. D. Blande, and B. R. Albrectsen. 2016. Central Metabolic Responses to Ozone and Herbivory Affect Photosynthesis and Stomatal Closure. Plant Physiol 172:2057-2078.

Pedmale, U. V., S. S. C. Huang, M. Zander, B. J. Cole, J. Hetzel, K. Ljung, P. A. B. Reis, P. Sridevi, K. Nito, J. R. Nery, J. R. Ecker, and J. Chory. 2016. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell 164:233-245.

Ponzio, C., S. Papazian, B. R. Albrectsen, M. Dicke, and R. Gols. 2017. Dual herbivore attack and herbivore density affect metabolic profiles of Brassica nigra leaves. Plant Cell and Environment 40:1356-1367.

Porco, S., A. Pencik, A. Rashed, U. Voss, R. Casanova-Saez, A. Bishopp, A. Golebiowska, R. Bhosale, R. Swarup, K. Swarup, P. Penakova, O. Novak, P. Staswick, P. Hedden, A. L. Phillips, K. Vissenberg, M. J. Bennett, and K. Ljung. 2016. Dioxygenase-encoding AtDAO1 gene controls IAA oxidation and homeostasis in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 113:11016-11021.

Poxson, D. J., M. Karady, R. Gabrielsson, A. Y. Alkattan, A. Gustavsson, S. M. Doyle, S. Robert, K. Ljung, M. Grebe, D. T. Simon, and M. Berggren. 2017. Regulating plant physiology with organic electronics. Proc Natl Acad Sci U S A 114:4597-4602.

Staubert, C., R. Krakowsky, H. Bhuiyan, B. Witek, A. Lindahl, O. Broom, and A. Nordstrom. 2016. Increased lanosterol turnover: a metabolic burden for daunorubicin-resistant leukemia cells. Medical Oncology 33.

Steenackers, W., P. Klima, M. Quareshy, I. Cesarino, R. P. Kumpf, S. Corneillie, P. Araujo, T. Viaene, G. Goeminne, M. K. Nowack, K. Ljung, J. Friml, J. J. Blakeslee, O. Novak, E. Zazimalova, R. Napier, W. Boerjan, and B. Vanholme. 2017. cis-Cinnamic Acid Is a Novel, Natural Auxin Efflux Inhibitor That Promotes Lateral Root Formation. Plant Physiol 173:552-565.

Sun, X., J. Cahill, T. Van Hautegem, K. Feys, C. Whipple, O. Novak, S. Delbare, C. Versteele, K. Demuynck, J. De Block, V. Storme, H. Claeys, M. Van Lijsebettens, G. Coussens, K. Ljung, A. De Vliegher, M. Muszynski, D. Inze, and H. Nelissen. 2017. Altered expression of maize PLASTOCHRON1 enhances biomass and seed yield by extending cell division duration. Nature Communications 8:14752.

Surowiec, I., C. G. Gjesdal, G. Jonsson, K. B. Norheim, T. Lundstedt, J. Trygg, and R. Omdal. 2016. Metabolomics study of fatigue in patients with rheumatoid arthritis naive to biological treatment. Rheumatology International 36:703-711.

Surowiec, I., S. Gouveia-Figueira, J. Orikiiriza, E. Lindquist, M. Bonde, J. Magambo, C. Muhinda, S. Bergstrom, J. Normark, and J. Trygg. 2017a. The oxylipin and endocannabidome responses in acute phase Plasmodium falciparum malaria in children. Malaria Journal 16.

Surowiec, I., E. Johansson, F. Torell, H. Idborg, I. Gunnarsson, E. Svenungsson, P. J. Jakobsson, and J. Trygg. 2017b. Multivariate strategy for the sample selection and integration of multi-batch data in metabolomics. Metabolomics 13.

Torell, F., K. Bennett, S. Cereghini, S. Rannar, K. Lundstedt-Enkel, T. Moritz, C. Haumaitre, J. Trygg, and T. Lundstedt. 2016. Tissue sample stability: thawing effect on multi-organ samples. Metabolomics 12.

Torell, F., K. Bennett, S. Rannar, K. Lundstedt-Enkel, T. Lundstedt, and J. Trygg. 2017. The effects of thawing on the plasma metabolome: evaluating differences between thawed plasma and multi-organ samples. Metabolomics 13:66.

Weiste, C., L. Pedrotti, J. Selvanayagam, P. Muralidhara, C. Froschel, O. Novak, K. Ljung, J. Hanson, and W. Droge-Laser. 2017. The Arabidopsis bZIP11 transcription factor links low-energy signalling to auxin-mediated control of primary root growth. PLoS Genet 13:e1006607.

Wu, J. F., S. Gouveia-Figueira, M. Domellof, A. M. Zivkovic, and M. L. Nording. 2016. Oxylipins, endocannabinoids, and related compounds in human milk: Levels and effects of storage conditions. Prostaglandins & Other Lipid Mediators 122:28-36.

Wuolikainen, A., P. Jonsson, M. Ahnlund, H. Antti, S. L. Marklund, T. Moritz, L. Forsgren, P. M. Andersen, and M. Trupp. 2016. Multi-platform mass spectrometry analysis of the CSF and plasma metabolomes of rigorously matched amyotrophic lateral sclerosis, Parkinson's disease and control subjects. Mol Biosyst 12:1287-1298.

Yan, Z. W., X. Liu, K. Ljung, S. N. Li, W. Y. Zhao, F. Yang, M. L. Wang, and Y. Tao. 2017. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiology 175:1438-1454.

Zheng, Z., Y. Guo, O. Novak, W. Chen, K. Ljung, J. P. Noel, and J. Chory. 2016. Local auxin metabolism regulates environment-induced hypocotyl elongation. Nature Plants 2:16025.

Nuclear Magnetic Resonance (NMR) spectroscopy KBC Core Facility

List of publications as co-authors

Anugwom, I., L. Rujana, J. Warna, M. Hedenstrom, and J. P. Mikkola. 2016. In quest for the optimal delignification of lignocellulosic biomass using hydrated, SO2 switched DBU MEASIL switchable ionic liquid. Chemical Engineering Journal 297:256-264.

Berglund, L., I. Anugwom, M. Hedenstrom, Y. Aitomaki, J. P. Mikkola, and K. Oksman. 2017. Switchable ionic liquids enable efficient nanofibrillation of wood pulp. Cellulose 24:3265-3279.

Dingeldein, A. P. G., M. Lidman, T. Sparrman, and G. Grobner. 2016. Dynamical and Structural Alterations withing Lipid-Protein Assemblies Control Apoptotic Pore Formation - A Solid State NMR Study. Biophysical Journal 110:59a-60a.

Dingeldein, A. P. G., S. Pokorna, M. Lidman, T. Sparrman, R. Sachl, M. Hof, and G. Grobner. 2017. Apoptotic Bax at Oxidatively Stressed Mitochondrial Membranes: Lipid Dynamics and Permeabilization. Biophysical Journal 112:2147-2158.

Dingeldein, A. P. G., T. Sparrman, and G. Grobner. 2018. Oxidatively stressed mitochondria-mimicking membranes: A molecular insight into their organization during apoptosis. Biochimica Et Biophysica Acta-Biomembranes 1860:2644-2654.

Driver, G. W., Y. Huang, A. Laaksonen, T. Sparrman, Y. L. Wang, and P. O. Westlund. 2017. Correlated/non-correlated ion dynamics of charge-neutral ion couples: the origin of ionicity in ionic liquids. Physical Chemistry Chemical Physics 19:4975-4988.

Figueira, J., P. Jonsson, A. N. Adolfsson, R. Adolfsson, L. Nyberg, and A. Ohman. 2016. NMR analysis of the human saliva metabolome distinguishes dementia patients from matched controls. Molecular Biosystems 12:2562-2571.

Gillgren, T., M. Hedenstrom, and L. J. Jonsson. 2017. Comparison of laccase-catalyzed cross-linking of organosolv lignin and lignosulfonates. International Journal of Biological Macromolecules 105:438-446.

Gouveia, M., J. Figueira, M. G. Jardim, R. Castro, H. Tomas, K. Rissanen, and J. Rodrigues. 2018. Poly(alkylidenimine) Dendrimers Functionalized with the Organometallic Moiety [Ru(eta(5)-C5H5)(PPh3)(2)](+) as Promising Drugs Against Cisplatin-Resistant Cancer Cells and Human Mesenchymal Stem Cells. Molecules 23.

Gupta, A. A., I. Reinartz, G. Karunanithy, A. Spilotros, V. R. Jonna, A. Hofer, D. I. Svergun, A. J. Baldwin, A. Schug, and M. Wolf-Watt. 2018. Formation of a Secretion-Competent Protein Complex by a Dynamic Wrap-around Binding Mechanism. Journal of Molecular Biology 430:3157-3169.

Ho, O., P. Rogne, T. Edgren, H. Wolf-Watz, F. H. Login, and M. Wolf-Watz. 2017. Characterization of the Ruler Protein Interaction Interface on the Substrate Specificity Switch Protein in the Yersinia Type III Secretion System. Journal of Biological Chemistry 292:3299-3311.

Karlsson, G., C. Persson, M. Mayzel, M. Hedenstrom, and L. Backman. 2016. Solution structure of the calmodulin-like C-terminal domain of Entamoeba-actinin2. Proteins-Structure Function and Bioinformatics 84:461-466.

Koukalova, A., M. Amaro, G. Aydogan, G. Grobner, P. T. F. Williamson, I. Mikhalyov, M. Hof, and R. Sachl. 2017. Lipid Driven Nanodomains in Giant Lipid Vesicles are Fluid and Disordered. Scientific Reports 7.

Kovermann, M., C. Grundstrom, A. E. Sauer-Eriksson, U. H. Sauer, and M. Wolf-Watz. 2017. Structural basis for ligand binding to an enzyme by a conformational selection pathway. Proceedings of the National Academy of Sciences of the United States of America 114:6298-6303.

Lendel, C., T. Sparrman, M. Mayzel, C. E. Andersson, G. Karlsson, and T. Hard. 2016. Combined Solution- and Magic Angle Spinning NMR Reveals Regions of Distinct Dynamics in Amyloid beta Protofibrils. Chemistryselect 1:5850-5853.

Lidman, M., A. Dingeldein, S. Pokorna, R. Sachl, T. Sparrman, M. Hof, and G. Grobner. 2016a. The Role of Lipids in Regulation of Programmed Cell Death. Biophysical Journal 110:473a-473a.

Lidman, M., S. Pokorna, A. P. G. Dingeldein, T. Sparrman, M. Wallgren, R. Sachl, M. Hof, and G. Grobner. 2016b. The oxidized phospholipid PazePC promotes permeabilization of mitochondrial membranes by Bax. Biochimica Et Biophysica Acta-Biomembranes 1858:1288-1297.

Livendahl, M., J. Jamroskovic, M. Hedenstrom, T. Gorlich, N. Sabouri, and E. Chorell. 2017. Synthesis of phenanthridine spiropyrans and studies of their effects on G-quadruplex DNA. Organic & Biomolecular Chemistry 15:3265-3275.

Mojica, S. A., O. Salin, R. J. Bastidas, N. Sunduru, M. Hedenstrom, C. D. Andersson, C. Nunez-Otero, P. Engstrom, R. H. Valdivia, M. Elofsson, and A. Gylfe. 2017. N-Acylated Derivatives of Sulfamethoxazole Block Chlamydia Fatty Acid Synthesis and Interact with FabF. Antimicrobial Agents and Chemotherapy 61.

Normark, M., L. Pommer, J. Grasvik, M. Hedenstrom, A. Gorzsas, S. Winestrand, and L. J. Jonsson. 2016. Biochemical Conversion of Torrefied Norway Spruce After Pretreatment with Acid or Ionic Liquid. Bioenergy Research 9:355-368.

Nowicki, J., M. Muszynski, and J. P. Mikkola. 2016. Ionic liquids derived from organosuperbases: en route to superionic liquids. Rsc Advances 6:9194-9208.

Oquist, M. G., B. Erhagen, M. Haei, T. Sparrman, U. Ilstedt, J. Schleucher, and M. B. Nilsson. 2017. The effect of temperature and substrate quality on the carbon use efficiency of saprotrophic decomposition. Plant and Soil 414:113-125.

Pawar, P. M. A., M. Derba-Maceluch, S. L. Chong, M. L. Gandla, S. S. Bashar, T. Sparrman, P. Ahvenainen, M. Hedenstrom, M. Ozparpucu, M. Ruggeberg, R. Serimaa, M. Lawoko, M. Tenkanen, L. J. Jonsson, and E. J. Mellerowicz. 2017a. In muro deacetylation of xylan affects lignin properties and improves saccharification of aspen wood. Biotechnology for Biofuels 10.

Pawar, P. M. A., C. Ratke, V. K. Balasubramanian, S. L. Chong, M. L. Gandla, M. Adriasola, T. Sparrman, M. Hedenstrom, K. Szwaj, M. Derba-Maceluch, C. Gaertner, G. Mouille, I. Ezcurra, M. Tenkanen, L. J. Jonsson, and E. J. Mellerowicz. 2017b. Downregulation of RWA genes in hybrid aspen affects xylan acetylation and wood saccharification. New Phytologist 214:1491-1505.

Rogne, P., M. Rosselin, C. Grundstrom, C. Hedberg, U. H. Sauer, and M. Wolf-Watz. 2018. Molecular mechanism of ATP versus GTP selectivity of adenylate kinase. Proceedings of the National Academy of Sciences of the United States of America 115:3012-3017.

Rogne, P., and M. Wolf-Watz. 2016. Urea-Dependent Adenylate Kinase Activation following Redistribution of Structural States. Biophysical Journal 111:1385-1395.

Segura, J. H., M. B. Nilsson, M. Haei, T. Sparrman, J. P. Mikkola, J. Grasvik, J. Schleucher, and M. G. Oquist. 2017. Microbial mineralization of cellulose in frozen soils. Nature Communications 8.

Song, Y., T. Jiang, V. Liem-Nguyen, T. Sparrman, E. Bjorn, and U. Skyllberg. 2018. Thermodynamics of Hg(II) Bonding to Thiol Groups in Suwannee River Natural Organic Matter Resolved by Competitive Ligand Exchange, Hg L-III-Edge EXAFS and H-1 NMR Spectroscopy. Environmental Science & Technology 52:8292-8301.

Soucemarianadin, L. N., B. Erhagen, M. B. Nilsson, M. G. Oquist, P. Immerzeel, and J. Schleucher. 2017. Two dimensional NMR spectroscopy for molecular characterization of soil organic matter: Application to boreal soils and litter. Organic Geochemistry 113:184-195.

Tukenmez, H., H. M. Magnussen, M. Kovermann, A. Bystrom, and M. Wolf-Watz. 2016. Linkage between Fitness of Yeast Cells and Adenylate Kinase Catalysis. PLoS One 11.

Wieloch, T., I. Ehlers, J. Yu, D. Frank, M. Grabner, A. Gessler, and J. Schleucher. 2018. Intramolecular C-13 analysis of tree rings provides multiple plant ecophysiology signals covering decades. Scientific Reports 8.

Yekta, S. S., M. Hedenstrom, J. E. Stehr, M. Dario, N. Hertkorn, and A. Bjorn. 2018. Pretreatment,of anaerobic digester samples by hydrochloric acid for solution-state H-1 and C-13 NMR spectroscopic characterization of organic matter. Chemosphere 199:201-209.

Chemical Biology Consortium Sweden (CBCS)

List of publications as co-authors

Andresen, L., V. Varik, Y. Tozawa, S. Jimmy, S. Lindberg, T. Tenson, and V. Hauryliuk. 2016. Auxotrophy-based High Throughput Screening assay for the identification of Bacillus subtilis stringent response inhibitors. Scientific Reports 6.

Hellgren, J. M., and S. Lindberg. 2017. Motivating students with authentic science experiences: changes in motivation for school science. Research in Science & Technological Education 35:409-426.

Huerta-Uribe, A., Z. R. Marjenberg, N. Yamaguchi, S. Fitzgerald, J. P. R. Connolly, N. Carpena, H. Uvell, G. Douce, M. Elofsson, O. Byron, R. Marquez, D. L. Gally, and A. J. Roe. 2016. Identification and Characterization of Novel Compounds Blocking Shiga Toxin Expression in Escherichia coli 0157:H7. Frontiers in Microbiology 7.

Islam, M. K., M. Baudin, J. Eriksson, C. Oberg, M. Habjan, F. Weber, A. K. Overby, C. Ahlm, and M. Evander. 2016. High-Throughput Screening Using a Whole-Cell Virus Replication Reporter Gene Assay to Identify Inhibitory Compounds against Rift Valley Fever Virus Infection. Journal of Biomolecular Screening 21:354-362.

Jamroskovic, J., M. Livendahl, J. Eriksson, E. Chorell, and N. Sabouri. 2016. Identification of Compounds that Selectively Stabilize Specific G-Quadruplex Structures by Using a Thioflavin T-Displacement Assay as a Tool. Chemistry-a European Journal 22:18932-18943.

Muheim, C., H. Gotzke, A. U. Eriksson, S. Lindberg, I. Lauritsen, M. H. H. Norholm, and D. O. Daley. 2017. Increasing the permeability of Escherichia coli using MAC13243. Scientific Reports 7.

Nilsson, L., A. Larsson, A. Begum, I. Iakovleva, M. Carlsson, K. Brannstrom, A. E. Sauer-Eriksson, and A. Olofsson. 2016. Modifications of the 7-Hydroxyl Group of the Transthyretin Ligand Luteolin Provide Mechanistic Insights into Its Binding Properties and High Plasma Specificity. PLoS One 11.

Saleeb, M., S. Mojica, A. U. Eriksson, C. D. Andersson, A. Gylfe, and M. Elofsson. 2018. Natural product inspired library synthesis - Identification of 2,3-diarylbenzofuran and 2,3-dihydrobenzofuran based inhibitors of Chlamydia trachomatis. European Journal of Medicinal Chemistry 143:1077-1089.

Zetterstrom, C. E., P. Uusitalo, W. X. Qian, S. Hinch, R. Caraballo, C. Grundstrom, and M. Elofsson. 2018. Screening for Inhibitors of Acetaldehyde Dehydrogenase (AdhE) from Enterohemorrhagic Escherichia coli (EHEC). Slas Discovery 23:815-822.

List of publications in Acknowledgements

Ekblad, T., P. Verheugd, A. E. Lindgren, T. Nyman, M. Elofsson, and H. Schuler. 2018. Identification of Poly(ADP-Ribose) Polymerase Macrodomain Inhibitors Using an AlphaScreen Protocol. Slas Discovery 23:353-362.

Engdahl, C., S. Knutsson, F. Ekstrom, and A. Linusson. 2016. Discovery of Selective Inhibitors Targeting Acetylcholinesterase 1 from Disease-Transmitting Mosquitoes. Journal of Medicinal Chemistry 59:9409-9421.

Computational Life Science Cluster (CLiC)

List of publications as co-authors

Bjarnmark, N. A., T. Yarra, A. M. Churcher, R. C. Felix, M. S. Clark, and D. M. Power. 2016. Transcriptomics provides insight into Mytilus galloprovincialis (Mollusca: Bivalvia) mantle function and its role in biomineralisation. Marine Genomics 27:37-45.

Batista, F. M., Churcher, A.M, Manchado, M. Leitao, A. and Power, D.M. 2018. Uncovering the immunological repertoire of the carpet shell clam Ruditapes decussatus through a transcriptomic-based approach, Aquaculture and Fisheries (2018), https://doi.org/10.1016/j.aaf.2018.03.003.

List of publications in Acknowledgements

Johansson, A., R. Claesson, C. H. Aberg, D. Haubek, and J. Oscarsson. 2017. The cagE gene sequence as a diagnostic marker to identify JP2 and non-JP2 highly leukotoxic Aggregatibacter actinomycetemcomitans serotype b strains. Journal of Periodontal Research 52:903-912.

Vibrational Spectroscopy Core Facility (ViSp)

Co-authored

Alban Reyes, D. C., A. Gorzsas, K. Stridh, P. de Wit, and O. Sundman. 2017. Alkalization of dissolving cellulose pulp with highly concentrated caustic at low NaOH stoichiometric excess. Carbohydr Polym 165:213-220.

Ferro, L., Gorzsás, A., Gentili, F.G., Funk, C. 2018. North Swedish microalgal strains able to grow and treat wastewater at low temperature and short photoperiod, Algal Research 35: 160-167.

Gillgren, T., and A. Gorzsas. 2016. A one-pot set-up for real-time reaction monitoring by FTIR spectroscopy. Wood Science and Technology 50:567-580.

Gorzsas, A. 2016. Raman Microspectroscopy, in: Encyclopedia of Geochemistry; White, WM (Ed), Springer International Publishing AG.

Gorzsas, A. 2017. Chemical Imaging of Xylem by Raman Microspectroscopy. Methods Mol Biol 1544:133-178.

Gustafsson, A., A. M. Krais, A. Gorzsas, T. Lundh, and P. Gerde. 2018. Isolation and characterization of a respirable particle fraction from residential house-dust. Environmental Research 161:284-290.

Nord, C., M. Eriksson, A. Dicker, A. Eriksson, E. Grong, E. Ilegems, R. Marvik, B. Kulseng, P. O. Berggren, A. Gorzsas, and U. Ahlgren. 2017. Biochemical profiling of diabetes disease progression by multivariate vibrational microspectroscopy of the pancreas. Sci Rep 7:6646.

Sheng, M., A. Gorzsas, and S. Tuck. 2016. Fourier transform infrared microspectroscopy for the analysis of the biochemical composition of C. elegans worms. Worm 5:e1132978.

Acknowledged

Forsberg, D. C. R., K. Stridh, P. P. de Wit, and O. Sundman. 2019. Is there a diffusion of alkali in the activation of dissolving cellulose pulp at low NAOH stoichiometric excess? Cellulose 26:1297-1308.

Hakobyan, S., O. Rzhepishevska, D. R. Barbero, and M. Ramstedt. 2018. Functionalization of zwitterionic polymer brushes, do they remain antifouling? Surface and Interface Analysis 50:1001-1006.

Hu, G. Z., E. Gracia-Espino, R. Sandstrom, T. Sharifi, S. D. Cheng, H. J. Shen, C. Y. Wang, S. J. Guo, G. Yang, and T. Wagberg. 2016. Atomistic understanding of the origin of high oxygen reduction electrocatalytic activity of cuboctahedral Pt3Co-Pt core-shell nanoparticles. Catalysis Science & Technology 6:1393-1401.

Iqbal, J., J. Enevold, C. Larsen, J. Wang, S. Revoju, H. R. Barzegar, T. Wagberg, B. Eliasson, and L. Edman. 2016. An arylene-vinylene based donor-acceptor-donor small molecule for the donor compound in high-voltage organic solar cells. Solar Energy Materials and Solar Cells 155:348-355.

Kwong, W. L., E. Gracia-Espino, C. Choo, R. Sandstrom, T. Wagberg, and J. Messinger. 2017. Cationic Vacancy Defects in Iron Phosphide: A Promising Route toward Efficient and Stable Hydrogen Evolution by Electrochemical Water Splitting. ChemSusChem 10:4544-4551.

Martin, C., M. G. Wei, S. J. Xiong, and L. J. Jonsson. 2017. Enhancing saccharification of cassava stems by starch hydrolysis prior to pretreatment. Industrial Crops and Products 97:21-31.

Miller, Q. R. S., E. S. Ilton, O. Qafoku, D. A. Dixon, M. Vasiliu, C. J. Thompson, H. T. Schaef, K. M. Rosso, and J. S. Loring. 2018. Water Structure Controls Carbonic Acid Formation in Adsorbed Water Films. Journal of Physical Chemistry Letters 9:4988-4994.

Nzayisenga, J. C., K. Eriksson, and A. Sellstedt. 2018. Mixotrophic and heterotrophic production of lipids and carbohydrates by a locally isolated microalga using wastewater as a growth medium. Bioresource Technology 257:260-265.

Pawar, P. M. A., M. Derba-Maceluch, S. L. Chong, L. D. Gomez, E. Miedes, A. Banasiak, C. Ratke, C. Gaertner, G. Mouille, S. J. McQueen-Mason, A. Molina, A. Sellstedt, M. Tenkanen, and E. J. Mellerowicz. 2016. Expression of fungal acetyl xylan esterase in Arabidopsis thaliana improves saccharification of stem lignocellulose. Plant Biotechnology Journal 14:387-397.

Pawar, P. M. A., A. Schnurer, E. J. Mellerowicz, and A. C. Ronnberg-Wastljung. 2018. QTL Mapping of Wood FT-IR Chemotypes Shows Promise for Improving Biofuel Potential in Short Rotation Coppice Willow (Salix spp.). Bioenergy Research 11:351-363.

Reyes, D. C. A., N. Skoglund, A. Svedberg, B. Eliasson, and O. Sundman. 2016. The influence of different parameters on the mercerisation of cellulose for viscose production. Cellulose 23:1061-1072.

Sarkar, A., E. Gracia-Espino, T. Wagberg, A. Shchukarev, M. Mohl, A. R. Rautio, O. Pitkanen, T. Sharifi, K. Kordas, and J. P. Mikkola. 2016. Photocatalytic reduction of CO2 with H2O over modified TiO2 nanofibers: Understanding the reduction pathway. Nano Research 9:1956-1968.

Sharifi, T., W. L. Kwong, H. M. Berends, C. Larsen, J. Messinger, and T. Wagberg. 2016a. Maghemite nanorods anchored on a 3D nitrogen-doped carbon nanotubes substrate as scalable direct electrode for water oxidation. International Journal of Hydrogen Energy 41:69-78.

Sharifi, T., C. Larsen, J. Wang, W. L. Kwong, E. Gracia-Espino, G. Mercier, J. Messinger, T. Wagberg, and L. Edman. 2016b. Toward a Low-Cost Artificial Leaf: Driving Carbon-Based and Bifunctional Catalyst Electrodes with Solution-Processed Perovskite Photovoltaics. Advanced Energy Materials 6.

Shen, H. J., E. Gracia-Espino, J. Y. Ma, H. D. Tang, X. Mamat, T. Wagberg, G. Z. Hu, and S. J. Guo. 2017. Atomically FeN2 moieties dispersed on mesoporous carbon: A new atomic catalyst for efficient oxygen reduction catalysis. Nano Energy 35:9-16.

Sun, J. H., A. Klechikov, C. Moise, M. Prodana, M. Enachescu, and A. V. Talyzin. 2018. A Molecular Pillar Approach To Grow Vertical Covalent Organic Framework Nanosheets on Graphene: Hybrid Materials for Energy Storage. Angewandte Chemie-International Edition 57:1034-1038.

Sundman, O., D. C. A. Reyes, A. Svedberg, and S. Hellstrom. 2016. On the origin of the spectroscopic signals of cellulose II-type in sulphite dissolving pulp. Nordic Pulp & Paper Research Journal 31:54-60.

Wojciechowska, A., A. Kochel, and M. Duczmal. 2016. Supramolecular assemblies in [Cu(L-Arg)(2)(H2O)]C2O4 center dot 6H(2)O complex - Structural, spectroscopic, magnetic and thermal behavior. Materials Chemistry and Physics 182:472-480.

PH Thesis

Zhang W. An add-on filter technique to improve micropollutant removal and water quality in on-site sewage treatment facilities. Doctoral thesis, KTH, 2018

Yesilbas, M (2018) Thin water and ice films on minerals: a molecular level study. PhD thesis, Umeå University

Reyes, DCA. (2018) Experimental study of alkalinisation of cellulose in industrial relevant conditions. PhD thesis, Umeå University

Wessels, B (2018) The significance of ethylene and ETHYLENE RESPONSE FACTORS in wood formation of hybrid aspen. PhD thesis, Umeå University

Krumina, L (2017) Adsorption, desorption, and redox reactions at iron oxide nanoparticle surfaces. PhD thesis. Lund University

Proteomics Core Facility

This list includes publications, in which scientific work from services, collaborations and research at the facility are included

Bygdell, J., V. Srivastava, O. Obudulu, M. K. Srivastava, R. Nilsson, B. Sundberg, J. Trygg, E. J. Mellerowicz, and G. Wingsle. 2017. Protein expression in tension wood formation monitored at high tissue resolution in Populus. Journal of Experimental Botany 68:3405-3417.

Espaillat, A., O. Forsmo, K. El Biari, R. Bjork, B. Lemaitre, J. Trygg, F. J. Canada, M. A. de Pedro, and F. Cava. 2016. Chemometric Analysis of Bacterial Peptidoglycan Reveals Atypical Modifications That Empower the Cell Wall against Predatory Enzymes and Fly Innate Immunity. Journal of the American Chemical Society 138:9193-9204.

Kieselbach, T., O. Cheregi, B. R. Green, and C. Funk. 2018. Proteomic analysis of the phycobiliprotein antenna of the cryptophyte alga Guillardia theta cultured under different light intensities. Photosynthesis Research 135:149-163.

Kieselbach, T., and J. Oscarsson. 2017. Dataset of the proteome of purified outer membrane vesicles from the human pathogen Aggregatibacter actinomycetemcomintans. Data Brief 10:426-431.

Wang, Z., and L. J. Jonsson. 2018. Comparison of catalytically non-productive adsorption of fungal proteins to lignins and pseudo-lignin using isobaric mass tagging. Bioresource Technology 268:393-401.

Zhang, X. Y., P. G. Dominguez, M. Kumar, J. Bygdell, S. Miroshnichenko, B. Sundberg, G. Wingsle, and T. Niittyla. 2018. Cellulose Synthase Stoichiometry in Aspen Differs from Arabidopsis and Norway Spruce. Plant Physiology 177:1096-1107.

Protein Expertise Platform (PEP)

Publications where PEP is acknowledged or PEP personnel is listed named as a co-author

Beljantseva, J., P. Kudrin, L. Andresen, V. Shingler, G. C. Atkinson, T. Tenson, and V. Hauryliuk. 2017. Negative allosteric regulation of Enterococcus faecalis small alarmone synthetase RelQ by single-stranded RNA. Proceedings of the National Academy of Sciences of the United States of America 114:3726-3731.

Boldinova, E. O., G. Stojkovic, R. Khairullin, S. Wanrooij, and A. V. Makarova. 2017. Optimization of the expression, purification and polymerase activity reaction conditions of recombinant human PrimPol. PLoS One 12.

Cooper, H. M., Y. Yang, E. Ylikallio, R. Khairullin, R. Woldegebriel, K. L. Lin, L. Euro, E. Palin, A. Wolf, R. Trokovic, P. Isohanni, S. Kaakkola, M. Auranen, T. Lonnqvist, S. Wanrooij, and H. Tyynismaa. 2017. ATPase-deficient mitochondrial inner membrane protein ATAD3A disturbs mitochondrial dynamics in dominant hereditary spastic paraplegia. Human Molecular Genetics 26:1432-1443.

Decker, D., and L. A. Kleczkowski. 2017. Substrate Specificity and Inhibitor Sensitivity of Plant UDP-Sugar Producing Pyrophosphorylases. Frontiers in Plant Science 8.

Decker, D., C. Oberg, and L. A. Kleczkowski. 2017. Identification and characterization of inhibitors of UDP-glucose and UDP-sugar pyrophosphorylases for in vivo studies. Plant Journal 90:1093-1107.

Hall, M., C. Grundstrom, A. Begum, M. J. Lindberg, U. H. Sauer, F. Almqvist, J. Johansson, and A. E. Sauer-Eriksson. 2016. Structural basis for glutathione-mediated activation of the virulence regulatory protein PrfA in Listeria. Proc Natl Acad Sci U S A 113:14733-14738.

Hall, M., R. Wagner, X. T. Lam, C. Funk, and K. Persson. 2017. The HhoA protease from Synechocystis sp PCC 6803-Novel insights into structure and activity regulation. Journal of Structural Biology 198:147-153.

Hansen, J. S., C. Krintel, M. Hernebring, T. J. Haataja, S. de Mare, S. Wasserstrom, U. Kosinska-Eriksson, M. Palmgren, C. Holm, K. G. Stenkula, H. A. Jones, and K. Lindkvist-Petersson. 2016. Perilipin 1 binds to aquaporin 7 in human adipocytes and controls its mobility via protein kinase A mediated phosphorylation. Metabolism 65:1731-1742.

Iakovleva, I., A. Begum, K. Brannstrom, A. Wijsekera, L. Nilsson, J. Zhang, P. L. Andersson, A. E. Sauer-Eriksson, and A. Olofsson. 2016. Tetrabromobisphenol A Is an Efficient Stabilizer of the Transthyretin Tetramer. PLoS One 11.

Karlberg, T., P. Hornyak, A. F. Pinto, S. Milanova, M. Ebrahimi, M. Lindberg, N. Pullen, A. Nordstrom, E. Loverli, R. Caraballo, E. V. Wong, K. Nareoja, A. G. Thorsell, M. Elofsson, E. M. De La Cruz, C. Bjorkegren, and H. Schuler. 2018. 14-3-3 proteins activate Pseudomonas exotoxins-S and -T by chaperoning a hydrophobic surface. Nature Communications 9:3785.

Mishra, Y., M. Hall, R. Locmelis, K. Nam, C. A. G. Soderberg, P. Storm, N. Chaurasia, L. C. Rai, S. Jansson, W. P. Schroder, and U. H. Sauer. 2017. Active-site plasticity revealed in the asymmetric dimer of AnPrx6 the 1-Cys peroxiredoxin and molecular chaperone from Anabaena sp PCC 7210. Scientific Reports 7.

Murina V., Kasari M., Reith M., Hauryliuk V., Atkinson G., 2017. ABCF ATPases involved in protein synthesis, ribosome assembly and antibiotic resistance: structural and functional diversification across the tree of life. bioRxiv online Nov. 16, 2017; doi: http://dx.doi.org/10.1101/220046

Rogne, P., M. Rosselin, C. Grundstrom, C. Hedberg, U. H. Sauer, and M. Wolf-Watz. 2018. Molecular mechanism of ATP versus GTP selectivity of adenylate kinase. Proc Natl Acad Sci U S A 115:3012-3017.

Sadanandan, S. A., J. O. Ekstrom, V. R. Jonna, A. Hofer, and D. Hultmark. 2016a. VP3 is crucial for the stability of Nora virus virions. Virus Research 223:20-27.

Sadanandan, S. A., J. O. Ekstrom, V. R. Jonna, A. Hofer, and D. Hultmark. 2016b. VP3 is crucial for the stability of Nora virus virions. Virus Research 223:20-27.

Spoerry, C., P. Hessle, M. J. Lewis, L. Paton, J. M. Woof, and U. von Pawel-Rammingen. 2016. Novel IgG-Degrading Enzymes of the IgdE Protease Family Link Substrate Specificity to Host Tropism of Streptococcus Species. PLoS One 11.

Torregrosa-Munumer, R., J. M. E. Forslund, S. Goffart, A. Pfeiffer, G. Stojkovic, G. Carvalho, N. Al-Furoukh, L. Blanco, S. Wanrooij, and J. L. O. Pohjoismaki. 2017. PrimPol is required for replication reinitiation after mtDNA damage. Proceedings of the National Academy of Sciences of the United States of America 114:11398-11403.

Tukenmez, H., H. M. Magnussen, M. Kovermann, A. Bystrom, and M. Wolf-Watz. 2016. Linkage between Fitness of Yeast Cells and Adenylate Kinase Catalysis. PLoS One 11.

Vanderlinde, E. M., T. G. Strozen, S. B. Hernandez, F. Cava, and S. P. Howard. 2017. Alterations in Peptidoglycan Cross-Linking Suppress the Secretin Assembly Defect Caused by Mutation of GspA in the Type II Secretion System. J Bacteriol 199.

Zhang, B., M. Holmlund, S. Lorrain, M. Norberg, L. Bako, C. Fankhauser, and O. Nilsson. 2017. BLADE-ON-PETIOLE proteins act in an E3 ubiquitin ligase complex to regulate PHYTOCHROME INTERACTING FACTOR 4 abundance. Elife 6.

Zhang, J., A. Begum, K. Brannstrom, C. Grundstrom, I. Iakovleva, A. Olofsson, A. E. Sauer-Eriksson, and P. L. Andersson. 2016a. Structure-Based Virtual Screening Protocol for in Silico Identification of Potential Thyroid Disrupting Chemicals Targeting Transthyretin. Environmental Science & Technology 50:11984-11993.

Zhang, J., Y. Z. Li, A. A. Gupta, K. Nam, and P. L. Andersson. 2016b. Identification and Molecular Interaction Studies of Thyroid Hormone Receptor Disruptors among Household Dust Contaminants. Chemical Research in Toxicology 29:1345-1354.

PhD theses that used PEP’s services and materials

Spoerry, Christian: “Streptococcal immunoglobulin degrading enzymes of the IdeS and IgdE family”, Ph.D. thesis, 2017, Umeå university, URN: urn:nbn:se:umu:diva-134552, ISBN: 9789176016985

Decker, Daniel: “UDP-sugar metabolizing pyrophosphorylases in plants: formation of precursors for essential glycosylation-reactions”, Ph.D. thesis 2017, Umeå university

http://www.diva-portal.org/smash/record.jsf?pid=diva2%3A1091316&dswid=-8025

Rende, Umut: “Sucrose Cleavage Pathways in Aspen Wood”, Ph.D. thesis No 2016:110, 2017, Faculty of Forest Sciences, SLU

Zhang, Jin: “In silico identification of thyroid disrupting chemicals among industrial chemicals and household dust contaminants", Ph.D. thesis, 2017, Umeå university, ISBN: 978-91-7601-551-3

Locmelis, Roland: “Structural biology studies of thylakoid lumen proteins required for photosystem II assembly and function.” PhD thesis, 2018, Dep. of Chemistry. Umeå university, ISBN: 978-91-7601-807-1

Bachelor-theses that used PEP´s service and/or materials

Norman, Per-Gustaf (2015) Cloning, Purification and Crystallization of Low PSII Accumulation 19 (LPA19) and Peroxiredoxin-6 (Prx6): A Thorny Road to Diffracting Crystals.

lbin, Norman (2016) Co-localization of CYP4F22 and CERS3 in HeLa and HEKn cells could point towards metabolic pathway interactions.

Günther, Matilda (2016) Co-localization between FATP4 and CYP4F22 suggest a role in the formation of epidermal acyl ceramides, essential for the permeability skin barrier

Olsson, Sara (2017) Studies of interactions between proteins causing autosomal recessive congenital ichthyosis and the effect of their mutations.

Mansourian, Anny (2017) Colocalization of SDR9C7 with other ARCI-causing proteins.

Levin, Kristina (2017) Regulatory effect of ppGpp and the three DksAs of Pseudomonas putida on transcription.

NanoLab

Co-authored

Asadpoordarvish, A., A. Sandstrom, and L. Edman. 2016. A Flexible Encapsulation Structure for Ambient-Air Operation of Light-Emitting Electrochemical Cells. Advanced Engineering Materials 18:105-110.

Barzegar, H. R., C. Larsen, N. Boulanger, A. Zettl, L. Edman, and T. Wagberg. 2018. Self-Assembled PCBM Nanosheets: A Facile Route to Electronic Layer-on-Layer Heterostructures. Nano Letters 18:1442-1447.

Barzegar, H. R., A. M. Yan, S. Coh, E. Gracia-Espino, G. Dunn, T. Wagberg, S. G. Louie, M. L. Cohen, and A. Zettl. 2016. Electrostatically Driven Nanoballoon Actuator. Nano Letters 16:6787-6791.

Dahlberg, T., T. Stangner, H. Q. Zhang, K. Wiklund, P. Lundberg, L. Edman, and M. Andersson. 2018. 3D printed water-soluble scaffolds for rapid production of PDMS micro-fluidic flow chambers. Scientific Reports 8.

Ekeroth, S., E. P. Munger, R. Boyd, J. Ekspong, T. Wagberg, L. Edman, N. Brenning, and U. Helmersson. 2018. Catalytic Nanotruss Structures Realized by Magnetic Self-Assembly in Pulsed Plasma. Nano Letters 18:3132-3137.

Gao, S. S., J. Liu, J. Luo, X. Mamat, S. Sambasivam, Y. T. Li, X. Hu, T. Wagberg, and G. Z. Hu. 2018. Selective voltammetric determination of Cd(II) by using N,S-codoped porous carbon nanofibers. Microchimica Acta 185.

Gao, S. S., C. Y. Xu, N. Yalikun, X. Mamat, Y. T. Li, T. Wagberg, X. Hu, J. Liu, J. Luo, and G. Z. Hu. 2017. Sensitive and Selective Differential Pulse Voltammetry Detection of Cd(II) and Pb(II) Using Nitrogen-Doped Porous Carbon Nanofiber Film Electrode. Journal of the Electrochemical Society 164:H967-H974.

Horvath, I., X. Jia, P. Johansson, C. Wang, R. Moskalenko, A. Steinau, L. Forsgren, T. Wagberg, J. Svensson, H. Zetterberg, and L. A. Morozova-Roche. 2016. Pro-inflammatory S100A9 Protein as a Robust Biomarker Differentiating Early Stages of Cognitive Impairment in Alzheimer's Disease. Acs Chemical Neuroscience 7:34-39.

Jiang, R. Y., N. T. Liu, S. S. Gao, X. Mamat, Y. H. Su, T. Wagberg, Y. T. Li, X. Hu, and G. Z. Hu. 2018. A Facile Electrochemical Sensor Based on PyTS-CNTs for Simultaneous Determination of Cadmium and Lead Ions. Sensors 18.

Keshmiri, V., C. Larsen, L. Edman, R. Forchheimer, and D. Tu. 2016. A Current Supply with Single Organic Thin-Film Transistor for Charging Supercapacitors. Thin Film Transistors 13 (Tft 13) 75:217-222.

Lanz, T., E. M. Lindh, and L. Edman. 2017. On the asymmetric evolution of the optical properties of a conjugated polymer during electrochemical p- and n-type doping. Journal of Materials Chemistry C 5:4706-4715.

Lanz, T., A. Sandstrom, S. Tang, P. Chabrecek, U. Sonderegger, and L. Edman. 2016. A light-emission textile device: conformal spray-sintering of a woven fabric electrode. Flexible and Printed Electronics 1.

Larsen, C., R. Forchheimer, L. Edman, and D. Y. Tu. 2017. Design, fabrication and application of organic power converters: Driving light-emitting electrochemical cells from the AC mains. Organic Electronics 45:57-64.

Lindh, E. M., P. Lundberg, T. Lanz, J. Mindemark, and L. Edman. 2018. The Weak Microcavity as an Enabler for Bright and Fault-tolerant Light-emitting Electrochemical Cells (vol 8, 2018). Scientific Reports 8.

Lindh, E. M., A. Sandstrom, M. R. Andersson, and L. Edman. 2016. Luminescent line art by direct-write patterning. Light-Science & Applications 5.

Liu, N. T., X. Mamat, R. Y. Jiang, W. Tong, Y. D. Huang, D. Z. Jia, Y. T. Li, L. Wang, T. Wagberg, and G. Z. Hu. 2018. Facile high-voltage sputtering synthesis of three-dimensional hierarchical porous nitrogen-doped carbon coated Si composite for high performance lithium-ion batteries. Chemical Engineering Journal 343:78-85.

Lundberg, P., E. M. Lindh, S. Tang, and L. Edman. 2017. Toward Efficient and Metal-Free Emissive Devices: A Solution Processed Host Guest Light-Emitting Electrochemical Cell Featuring Thermally Activated Delayed Fluorescence. Acs Applied Materials & Interfaces 9:28810-28816.

Mindemark, J., and L. Edman. 2016. Illuminating the electrolyte in light-emitting electrochemical cells. Journal of Materials Chemistry C 4:420-432.

Mindemark, J., S. Tang, H. Li, and L. Edman. 2018. Ion Transport beyond the Polyether Paradigm: Introducing Oligocarbonate Ion Transporters for Efficient Light-Emitting Electrochemical Cells. Advanced Functional Materials 28.

Mindemark, J., S. Tang, J. Wang, N. Kaihovirta, D. Brandell, and L. Edman. 2016. High-Performance Light-Emitting Electrochemical Cells by Electrolyte Design. Chemistry of Materials 28:2618-2623.

Murto, P., S. Tang, C. Larsen, X. F. Xu, A. Sandstrom, J. Pietarinen, B. Bagemihl, B. A. Abdulahi, W. Mammo, M. R. Andersson, E. G. Wang, and L. Edman. 2018. Incorporation of Designed Donor-Acceptor-Donor Segments in a Host Polymer for Strong Near-Infrared Emission from a Large-Area Light-Emitting Electrochemical Cell. Acs Applied Energy Materials 1:1753-1761.

Qin, D. F., S. S. Gao, L. Wang, H. J. Shen, N. Yalikun, P. Sukhrobov, T. Wagberg, Y. J. Zhao, X. Mamat, and G. Z. Hu. 2017a. Three-dimensional carbon nanofiber derived from bacterial cellulose for use in a Nafion matrix on a glassy carbon electrode for simultaneous voltammetric determination of trace levels of Cd(II) and Pb(II). Microchimica Acta 184:2759-2766.

Qin, D. F., X. Hu, Y. M. Dong, X. Mamat, Y. T. Li, T. Wagberg, and G. Z. Hu. 2018. An Electrochemical Sensor Based on Green gamma-AlOOH-Carbonated Bacterial Cellulose Hybrids for Simultaneous Determination Trace Levels of Cd(II) and Pb(II) in Drinking Water. Journal of the Electrochemical Society 165:B328-B334.

Qin, D. F., R. Y. Xu, H. J. Shen, X. Mamat, L. Wang, S. S. Gao, Y. Wang, N. Yalikun, T. Wagberg, S. G. Zhang, Q. H. Yuan, Y. T. Li, and G. Z. Hu. 2017b. Protic salt-based nitrogen-doped mesoporous carbon for simultaneous electrochemical detection of Cd(II) and Pb(II). Rsc Advances 7:36929-36934.

Shen, H. J., E. Gracia-Espino, J. Y. Ma, H. D. Tang, X. Mamat, T. Wagberg, G. Z. Hu, and S. J. Guo. 2017a. Atomically FeN2 moieties dispersed on mesoporous carbon: A new atomic catalyst for efficient oxygen reduction catalysis. Nano Energy 35:9-16.

Shen, H. J., E. Gracia-Espino, J. Y. Ma, K. T. Zang, J. Luo, L. Wang, S. S. Gao, X. Mamat, G. Z. Hu, T. Wagberg, and S. J. Guo. 2017b. Synergistic Effects between Atomically Dispersed Fe-N-C and C-S-C for the Oxygen Reduction Reaction in Acidic Media. Angewandte Chemie-International Edition 56:13800-13804.

Shen, H. J., E. Gracia-Espino, L. Wang, D. F. Qin, S. S. Gao, X. Mamat, W. Ren, T. Wagberg, and G. Z. Hu. 2017c. Microwave-assisted synthesis of multimetal oxygen-evolving catalysts. Electrochemistry Communications 81:116-119.

Shen, H. J., D. F. Qin, Y. Z. Li, S. Z. Li, C. Yang, Q. H. Yuan, T. Wagberg, and G. Z. Hu. 2016. In situ Magnesiothermal Synthesis of Mesoporous MgO/OMC Composite for Sensitive Detection of Lead Ions. Electroanalysis 28:2939-2946.

Sukhrobov, P., S. Numonov, S. S. Gao, X. Mamat, T. Wagberg, Y. F. Guo, L. W. Liu, and G. Z. Hu. 2018. Nonenzymatic Glucose Biosensor Based on NiNPs/Nafion/Graphene Film for Direct Glucose Determination in Human Serum. Nano 13.

Tang, S., and L. Edman. 2016. Light-Emitting Electrochemical Cells: A Review on Recent Progress. Topics in Current Chemistry 374.

Tang, S., P. Murto, X. F. Xu, C. Larsen, E. G. Wang, and L. Edman. 2017a. Intense and Stable Near-Infrared Emission from Light-Emitting Electrochemical Cells Comprising a Metal-Free Indacenodithieno[3,2-b]thiophene-Based Copolymer as the Single Emitter. Chemistry of Materials 29:7750-7759.

Tang, S., A. Sandstrom, P. Lundberg, T. Lanz, C. Larsen, S. van Reenen, M. Kemerink, and L. Edman. 2017b. Design rules for light-emitting electrochemical cells delivering bright luminance at 27.5 percent external quantum efficiency. Nature Communications 8.

Xu, J., A. Sandstrom, E. M. Lindh, W. Yang, S. Tang, and L. Edman. 2018. Challenging Conventional Wisdom: Finding High-Performance Electrodes for Light-Emitting Electrochemical Cells. Acs Applied Materials & Interfaces 10:33380-33389.

Zhan, X. J., G. Z. Hu, T. Wagberg, S. S. Zhan, H. C. Xu, and P. Zhou. 2016. Electrochemical aptasensor for tetracycline using a screen-printed carbon electrode modified with an alginate film containing reduced graphene oxide and magnetite (Fe3O4) nanoparticles. Microchimica Acta 183:723-729.

Zhan, X. J., G. Z. Hu, T. Wagberg, D. W. Zhang, and P. Zhou. 2018. A Label-Free Electrochemical Aptasensor for the Rapid Detection of Tetracycline Based on Ordered Mesoporous Carbon-Fe3O4. Australian Journal of Chemistry 71:170-176.

Biogeochemical Analytical Facility (BAF)

List of publications where Anders Jonsson (2017-2018) employed at BAF are included

Klaus, M., E. Geibrink, A. Jonsson, A. K. Bergstrom, D. Bastviken, H. Laudon, J. Klaminder, and J. Karlsson. 2018. Greenhouse gas emissions from boreal inland waters unchanged after forest harvesting. Biogeosciences 15:5575-5594.

Deninger et al. 2018. Pelagic food webs of humic lakes show low short-term response to forest harvesting. Accepted Ecological Applications.

Isles P. et al. 2018. Effects of season and dissolved organic carbon on phytoplankton resource limitation in northern lakes. Submitted Freshwater Biology.

Biopolymer Analytical Platform (BAP)

Acknowledged

Blokhina, O., C. Valerio, K. Sokolowska, L. Zhao, A. Karkonen, T. Niittyla, and K. Fagerstedt. 2017. Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants. Frontiers in Plant Science 7.

Bravo, A. G., S. Bouchet, J. Tolu, E. Bjorn, A. Mateos-Rivera, and S. Bertilsson. 2017. Molecular composition of organic matter controls methylmercury formation in boreal lakes. Nature Communications 8.

Escamez, S., M. L. Gandla, M. Derba-Maceluch, S. O. Lundqvist, E. J. Mellerowicz, L. J. Jonsson, and H. Tuominen. 2017. A collection of genetically engineered Populus trees reveals wood biomass traits that predict glucose yield from enzymatic hydrolysis. Scientific Reports 7.

Gao, Q., V. L. Budarin, M. Cieplik, M. Gronnow, and S. Jansson. 2016. PCDDs, PCDFs and PCNs in products of microwave-assisted pyrolysis of woody biomass - Distribution among solid, liquid and gaseous phases and effects of material composition. Chemosphere 145:193-199.

Martin, C., M. G. Wei, S. J. Xiong, and L. J. Jonsson. 2017. Enhancing saccharification of cassava stems by starch hydrolysis prior to pretreatment. Industrial Crops and Products 97:21-31.

Ninnes, S., J. Tolu, C. Meyer-Jacob, T. M. Mighall, and R. Bindler. 2017. Investigating molecular changes in organic matter composition in two Holocene lake-sediment records from central Sweden using pyrolysis-GC/MS. Journal of Geophysical Research-Biogeosciences 122:1423-1438.

Obudulu, O., N. Mahler, T. Skotare, J. Bygdell, I. N. Abreu, M. Ahnlund, M. L. Gandla, A. Petterle, T. Moritz, T. R. Hvidsten, L. J. Jonsson, G. Wingsle, J. Trygg, and H. Tuominen. 2018. A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees. BMC Genomics 19.

Ratke, C., B. K. Terebieniec, S. Winestrand, M. Derba-Maceluch, T. Grahn, B. Schiffthaler, T. Ulvcrona, M. Ozparpucu, M. Ruggeberg, S. O. Lundqvist, N. R. Street, L. J. Jonsson, and E. J. Mellerowicz. 2018. Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome. New Phytologist 219:230-245.

Roach, M., S. Arrivault, A. Mahboubi, N. Krohn, R. Sulpice, M. Stitt, and T. Niittyla. 2017. Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood. Journal of Experimental Botany 68:3529-3539.

Tolu, J., J. Rydberg, C. Meyer-Jacob, L. Gerber, and R. Bindler. 2017. Spatial variability of organic matter molecular composition and elemental geochemistry in surface sediments of a small boreal Swedish lake. Biogeosciences 14:1773-1792.

Wang, Z., S. Winestrand, T. Gillgren, and L. J. Jonsson. 2018a. Chemical and structural factors influencing enzymatic saccharification of wood from aspen, birch and spruce. Biomass & Bioenergy 109:125-134.

Wang, Z., G. C. Wu, and L. J. Jonsson. 2018b. Effects of impregnation of softwood with sulfuric acid and sulfur dioxide on chemical and physical characteristics, enzymatic digestibility, and fermentability. Bioresource Technology 247:200-208.

Latest update: 2019-09-05